Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J3R86_RS05140 Genome accession   NZ_CP071589
Coordinates   1133172..1134047 (+) Length   291 a.a.
NCBI ID   WP_207518348.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1128172..1139047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS05120 (J3R86_05120) ylqF 1128801..1129685 (+) 885 WP_207518343.1 ribosome biogenesis GTPase YlqF -
  J3R86_RS05125 (J3R86_05125) - 1129669..1130454 (+) 786 WP_207518345.1 ribonuclease HII -
  J3R86_RS05130 (J3R86_05130) sucC 1130606..1131772 (+) 1167 WP_207518346.1 ADP-forming succinate--CoA ligase subunit beta -
  J3R86_RS05135 (J3R86_05135) sucD 1131794..1132702 (+) 909 WP_002465077.1 succinate--CoA ligase subunit alpha -
  J3R86_RS05140 (J3R86_05140) dprA 1133172..1134047 (+) 876 WP_207518348.1 DNA-processing protein DprA Machinery gene
  J3R86_RS05145 (J3R86_05145) topA 1134598..1136673 (+) 2076 WP_207518518.1 type I DNA topoisomerase -
  J3R86_RS05150 (J3R86_05150) ltrA 1137254..1138540 (+) 1287 WP_207518488.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33868.91 Da        Isoelectric Point: 7.9999

>NTDB_id=546724 J3R86_RS05140 WP_207518348.1 1133172..1134047(+) (dprA) [Staphylococcus simiae strain 17941E]
MKDLEQSLLKLVWQQFSTTQIHHLLRQFPTFLTADHYEQCYMLEQFKYISTKSNLQFKFQMYKKTSIDEIMTYFQQLNIN
YLSVFNDAYPHFLKQIYDFPFVLFYQGQLQILQHYNTLAIIGSRQASSYTKNVLNHFFPEFANHQLTIVSGLAIGADSFA
HQFALKYHMSTVAVLAFGHEHHYPKETLLLRQQIAEQGIVISEYMPKSSIAKYRFPERNRLISGLSKGIFITEAKERSGS
HITIDCALEQNRNVYVLPGSIFNPLTKGNLLRIQEGAKVVIDAQDIIEDYL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=546724 J3R86_RS05140 WP_207518348.1 1133172..1134047(+) (dprA) [Staphylococcus simiae strain 17941E]
ATGAAAGATTTAGAACAAAGTCTGCTGAAATTAGTATGGCAACAATTTTCTACTACTCAAATTCACCATTTACTTCGACA
ATTCCCCACATTTTTAACTGCAGATCATTATGAACAATGTTATATGCTAGAACAATTTAAATATATATCAACTAAAAGCA
ATTTACAGTTTAAATTTCAAATGTACAAAAAGACCTCAATAGATGAAATTATGACATATTTTCAACAATTGAATATCAAT
TACCTCTCCGTGTTTAATGATGCCTATCCTCATTTTTTAAAACAAATTTATGATTTTCCATTTGTACTTTTTTATCAAGG
ACAACTTCAAATATTGCAACACTATAATACATTGGCAATTATAGGTTCCAGACAAGCTAGTTCGTATACGAAAAATGTTT
TAAATCACTTTTTTCCAGAATTCGCTAATCATCAACTAACTATTGTTTCTGGCTTAGCAATCGGTGCTGATAGTTTTGCG
CACCAATTTGCGCTTAAGTATCATATGTCAACAGTAGCAGTTTTAGCGTTTGGCCATGAACATCATTACCCCAAAGAAAC
TTTGTTATTAAGACAACAAATTGCTGAACAAGGTATTGTAATAAGTGAATACATGCCCAAAAGTTCAATTGCAAAATATA
GGTTTCCAGAACGTAATCGTCTAATTAGTGGATTATCAAAAGGTATTTTTATTACAGAAGCGAAAGAGCGTAGTGGAAGT
CACATCACTATAGATTGTGCGCTTGAACAAAATAGAAATGTTTATGTTTTACCTGGTTCTATTTTTAATCCTTTAACTAA
AGGCAATTTATTAAGGATTCAAGAAGGAGCGAAAGTAGTTATAGACGCACAAGACATCATTGAAGATTATCTATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

54.196

98.282

0.533
  dprA Staphylococcus aureus N315

54.196

98.282

0.533