Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   J3R86_RS04215 Genome accession   NZ_CP071589
Coordinates   929313..929882 (+) Length   189 a.a.
NCBI ID   WP_207518189.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 924313..934882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS04190 (J3R86_04190) - 925218..926726 (+) 1509 WP_207518185.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  J3R86_RS04195 (J3R86_04195) - 926828..927430 (-) 603 WP_207518186.1 CPBP family glutamic-type intramembrane protease -
  J3R86_RS04200 (J3R86_04200) - 927445..927621 (-) 177 WP_002461909.1 DUF2187 family protein -
  J3R86_RS04205 (J3R86_04205) - 927820..928806 (+) 987 WP_207518187.1 lipoate--protein ligase -
  J3R86_RS04210 (J3R86_04210) - 928887..929105 (-) 219 WP_207518188.1 IDEAL domain-containing protein -
  J3R86_RS04215 (J3R86_04215) comK/comK1 929313..929882 (+) 570 WP_207518189.1 competence protein ComK Regulator
  J3R86_RS12225 - 930602..930697 (-) 96 WP_278249700.1 SAR1012 family small protein -
  J3R86_RS04230 (J3R86_04230) - 930762..930989 (-) 228 WP_002462662.1 TM2 domain-containing protein -
  J3R86_RS04235 (J3R86_04235) - 931132..931698 (+) 567 WP_207518190.1 GNAT family N-acetyltransferase -
  J3R86_RS04240 (J3R86_04240) - 931761..932699 (-) 939 WP_207518513.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  J3R86_RS04245 (J3R86_04245) - 932880..934241 (+) 1362 WP_207518191.1 isochorismate synthase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22571.79 Da        Isoelectric Point: 9.3229

>NTDB_id=546723 J3R86_RS04215 WP_207518189.1 929313..929882(+) (comK/comK1) [Staphylococcus simiae strain 17941E]
MHSQSVYVIHKGDMVIRPATDEYDQPNGSEIIRFDQTRIHSPFKVQKIIERSCKFYGNTYLGKKAETNRITSISSKPPIL
LTPLFPTYFFPTHSDRQRENIWINMHYIEEIKELKNRKCRITFINNESIILHVSYHSLWHQYTNAILYYYLVDKQSRMIS
RNPDQPIDYNKATLNIFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=546723 J3R86_RS04215 WP_207518189.1 929313..929882(+) (comK/comK1) [Staphylococcus simiae strain 17941E]
ATGCATTCACAAAGTGTTTATGTTATTCATAAAGGAGATATGGTTATTCGTCCAGCTACAGATGAATATGATCAACCTAA
TGGCAGTGAAATTATTCGCTTCGATCAAACTAGGATACATAGTCCATTTAAAGTTCAAAAAATAATCGAGCGCTCTTGTA
AATTTTATGGCAATACATATTTAGGTAAAAAAGCTGAAACAAATCGTATTACTTCCATTTCAAGTAAACCACCAATTTTA
TTGACGCCACTTTTCCCAACTTACTTTTTCCCTACACATTCTGATAGACAACGAGAAAATATTTGGATTAATATGCATTA
CATTGAAGAAATTAAAGAATTAAAAAACCGCAAATGTCGTATTACTTTTATTAATAACGAAAGTATCATCCTACATGTTT
CATACCACAGTTTATGGCACCAATATACTAATGCTATTTTATACTACTATCTTGTTGATAAACAATCCCGCATGATATCA
AGAAACCCGGATCAACCAATTGACTATAATAAAGCAACACTCAATATTTTTGAAGCATTAACGCGATATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(6-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

87.831

100

0.878
  comK/comK1 Staphylococcus aureus N315

87.831

100

0.878