Detailed information NTG0546670

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: J0G10_RS22315
• Genome accession: NZ_CP071586
• Coordinates: 5049368..5051602 (-)
• Length: 744 a.a.
• NCBI ID: WP_095125210.1
• Uniprot ID: -
• Organism: Pseudomonas germanica strain FIT28
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5044368..5056602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J0G10_RS22280 (J0G10_22290)	murB	5044748..5045767 (-)	1020	WP_220556713.1	UDP-N-acetylmuramate dehydrogenase	-
J0G10_RS22285 (J0G10_22295)	-	5045764..5046228 (-)	465	WP_093435454.1	low molecular weight protein-tyrosine-phosphatase	-
J0G10_RS22290 (J0G10_22300)	kdsB	5046228..5046992 (-)	765	WP_220556714.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
J0G10_RS22295 (J0G10_22305)	-	5046989..5047174 (-)	186	WP_003174668.1	Trm112 family protein	-
J0G10_RS22300 (J0G10_22310)	lpxK	5047196..5048206 (-)	1011	WP_095048624.1	tetraacyldisaccharide 4'-kinase	-
J0G10_RS22305 (J0G10_22315)	-	5048206..5048634 (-)	429	WP_093435463.1	biopolymer transporter ExbD	-
J0G10_RS22310 (J0G10_22320)	exbB	5048631..5049266 (-)	636	WP_042560451.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
J0G10_RS22315 (J0G10_22325)	comA	5049368..5051602 (-)	2235	WP_095125210.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
J0G10_RS22320 (J0G10_22330)	-	5051739..5052257 (+)	519	WP_095048627.1	DUF2062 domain-containing protein	-
J0G10_RS22325 (J0G10_22335)	-	5052401..5053180 (-)	780	WP_008087860.1	ABC transporter permease	-
J0G10_RS22330 (J0G10_22340)	-	5053177..5054109 (-)	933	WP_093435472.1	ABC transporter ATP-binding protein	-
J0G10_RS22335 (J0G10_22345)	-	5054233..5054856 (-)	624	WP_220556715.1	glutathione S-transferase	-
J0G10_RS22340 (J0G10_22350)	-	5054900..5055559 (-)	660	WP_093435478.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81434.23 Da
• Isoelectric Point: 9.7123

>NTDB_id=546670 J0G10_RS22315 WP_095125210.1 5049368..5051602(-) (comA) [Pseudomonas germanica strain FIT28]
MRTGMMALAVGLLVAVFMPALPPVWLMLLLPVVALMLLPFRSYPLAFLLFGFTWASVGAQWALNDRLPAGLDGETRWVEG
RVVGLPQNSDGVVRFELADAHSRHEKLPSLMRLAWYAGPQVNSGERWRLAVKLKRPSGLRNPEAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLSVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAAMMYGL
VAGMARYGLWPLRWPWLPWACGLGFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAGWPLLLAFNAVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLAVLPPAL
LGTVLLPVPFVGAGLLWLAGGLIDGLFHALATIAGHWPAWIAPSIPAWVWVIGSLGAGLLLLPRGVPLRPLGWPLLLLLV
VPPRDQIDEGLADIWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPSLRKLSVEKLDLMLLSHADADHAGGA
LAISRGLTVDQVISGDPAGLPAQLNAEACASGQQWQWDGVRFQLWQWADADDSNQRSCVLQIEANGERLLLTGDIDSHAE
RVLLDGPLAVPTQWLQSPHHGSRSSSSMALLNVLKPESVLISRGHGNSFGHPHPTVLARYRKLGLHIYDSAEQGAIHLQL
GTFRAPRTMRHQRRFWRDPPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=546670 J0G10_RS22315 WP_095125210.1 5049368..5051602(-) (comA) [Pseudomonas germanica strain FIT28]
ATGCGCACAGGGATGATGGCGCTCGCAGTCGGTCTGCTGGTCGCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGGTCGTGGCTTTGATGCTGCTGCCGTTTCGCAGCTATCCGCTGGCGTTTTTGCTGTTTGGCTTCACGT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGTTTGCCGGCCGGGCTGGATGGCGAAACCCGGTGGGTTGAAGGG
CGGGTCGTCGGTTTGCCGCAGAACAGCGACGGCGTGGTGCGCTTCGAATTGGCTGATGCGCACTCGCGTCATGAAAAACT
GCCATCGCTGATGCGGCTTGCCTGGTACGCCGGGCCGCAGGTCAACAGCGGCGAGCGTTGGCGCTTGGCGGTCAAGCTCA
AGCGTCCCAGTGGATTGCGCAATCCCGAGGCCTTCGACTACGAGGCTTGGCTGCTGGCGCAACGCATTGGCGCCACCGGC
ACAATCAAGGACGGCCAGCGCTTGAGCGAAGCGCGCTGGGCCTGGCGTGACAGTATTCGCCAGCGTTTGCTGAGCGTGGA
TGCGCAGGGGCGAAATGGCGCATTGGCGGCGTTAGTGCTGGGTGACGGCTCGGGGCTCAGTCGCGAGGACTGGCAGACTC
TGCAGGACACCGGCACCGTGCACTTGCTGGTGATTTCCGGTCAGCACATCGGTTTGCTGGCGGCGATGATGTATGGGCTG
GTCGCCGGCATGGCGCGATATGGCCTGTGGCCGCTGCGCTGGCCGTGGCTGCCGTGGGCATGTGGTCTGGGGTTCGCGGC
AGCGCTCGGTTATGGCCTGCTTGCCGGGTTCGACGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGTCATCTTGGCGCAGGATGGCCGTTGTTGCTGGCGTTCAACGCTGTGCTGTTGCTGGACCCGCTC
GCCAGTTTGCGTCCGGGTCTGTGGCTCTCGTTTGCGGCGGTGGCGGTGTTGATCTTTACCTTTGGCGGCCGCTTGGGTGC
GTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAGTGGTTGATCGCGATCGGCTTATGTCCGGTGTTGCTGGCGCTGAATC
TGCCGATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTTGCAGTGCCTTGGGTCAGTCTTGCGGTGTTACCGCCGGCGCTG
CTTGGAACCGTGTTGCTGCCTGTTCCTTTTGTCGGCGCCGGCCTGCTGTGGCTGGCCGGCGGTTTGATCGATGGGTTGTT
TCACGCGCTGGCGACGATTGCCGGGCATTGGCCGGCATGGATCGCACCCTCGATACCCGCTTGGGTCTGGGTCATTGGCA
GCCTCGGCGCCGGGTTGTTGCTATTGCCGCGCGGCGTGCCGCTGCGTCCATTGGGCTGGCCGTTGTTGCTGCTGCTGGTC
GTGCCGCCACGCGATCAGATAGATGAAGGATTGGCCGATATCTGGCAGCTTGATGTCGGCCAAGGCTTGGCCATCCTGAT
CCGGACCCGCCATCACGCGTTGCTCTACGATGCGGGGCCGCGCTTTGGTGAGTTCGATCTCGGCGAGCGTGTGGTGCTGC
CTTCATTGCGCAAACTGAGCGTGGAAAAACTCGATTTGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGCGGCGCT
TTGGCGATCAGCCGGGGTTTGACTGTCGATCAGGTAATCAGCGGTGACCCGGCGGGGCTGCCCGCGCAATTGAACGCCGA
AGCCTGTGCAAGTGGCCAGCAATGGCAATGGGACGGCGTACGTTTTCAACTCTGGCAGTGGGCGGACGCTGACGACAGCA
ATCAGCGTTCCTGCGTATTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGCTGACCGGCGACATCGACAGCCATGCCGAA
CGCGTGCTGCTCGACGGTCCACTGGCCGTGCCGACGCAATGGCTGCAATCGCCCCATCATGGCAGCCGCAGTTCATCGTC
AATGGCGCTGCTCAACGTCTTGAAACCCGAGTCCGTGCTGATCTCTCGAGGTCATGGCAACTCTTTTGGCCATCCGCACC
CGACCGTGCTGGCGCGTTATCGCAAACTGGGCCTGCACATTTACGACAGTGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCACCTTCAGGGCGCCACGCACGATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCACTGGCCCGCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.291	96.237	0.599
comA	Ralstonia pseudosolanacearum GMI1000	31.659	100	0.364