Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BKM86_RS03115 Genome accession   NZ_CP071585
Coordinates   591987..592760 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain GB26     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 586987..597760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM86_RS03100 (BKM86_03100) - 587836..589770 (-) 1935 WP_002854954.1 ribonuclease R family protein -
  BKM86_RS03105 (BKM86_03105) ilvC 589889..590911 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  BKM86_RS03110 (BKM86_03110) - 590915..591997 (+) 1083 WP_052806228.1 divergent polysaccharide deacetylase family protein -
  BKM86_RS03115 (BKM86_03115) dprA 591987..592760 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  BKM86_RS03120 (BKM86_03120) ruvX 592757..593140 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  BKM86_RS03125 (BKM86_03125) - 593169..594008 (+) 840 WP_072224444.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BKM86_RS03130 (BKM86_03130) msrA 594187..594684 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BKM86_RS03135 (BKM86_03135) ppa 594725..595243 (-) 519 WP_002867724.1 inorganic diphosphatase -
  BKM86_RS03140 (BKM86_03140) adk 595253..595831 (-) 579 WP_002859580.1 adenylate kinase -
  BKM86_RS03145 (BKM86_03145) aspS 595828..597579 (-) 1752 WP_002908827.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=546635 BKM86_RS03115 WP_002859984.1 591987..592760(+) (dprA) [Campylobacter jejuni subsp. jejuni strain GB26]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=546635 BKM86_RS03115 WP_002859984.1 591987..592760(+) (dprA) [Campylobacter jejuni subsp. jejuni strain GB26]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459