Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   J3Q13_RS07000 Genome accession   NZ_CP071583
Coordinates   1391966..1392553 (-) Length   195 a.a.
NCBI ID   WP_052802772.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GB60     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386966..1397553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q13_RS06980 (J3Q13_06980) - 1387714..1388478 (+) 765 WP_052802770.1 TIGR02757 family protein -
  J3Q13_RS06985 (J3Q13_06985) - 1388482..1389246 (+) 765 WP_002855821.1 TSUP family transporter -
  J3Q13_RS06990 (J3Q13_06990) ctsF 1389239..1390420 (-) 1182 WP_052802771.1 type II secretion system F family protein Machinery gene
  J3Q13_RS06995 (J3Q13_06995) ctsE 1390417..1391976 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  J3Q13_RS07000 (J3Q13_07000) ctsX 1391966..1392553 (-) 588 WP_052802772.1 transformation system protein Machinery gene
  J3Q13_RS07005 (J3Q13_07005) ctsP 1392557..1393165 (-) 609 WP_052802773.1 ATP-binding protein Machinery gene
  J3Q13_RS07010 (J3Q13_07010) ctsD 1393158..1394570 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q13_RS07015 (J3Q13_07015) ctsR 1394548..1394859 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23433.52 Da        Isoelectric Point: 9.8479

>NTDB_id=546597 J3Q13_RS07000 WP_052802772.1 1391966..1392553(-) (ctsX) [Campylobacter jejuni strain GB60]
MQERIKELELRYKYFLLKRYLKYLFLIVLILVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=546597 J3Q13_RS07000 WP_052802772.1 1391966..1392553(-) (ctsX) [Campylobacter jejuni strain GB60]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATATTTTTTACTTAAAAGATATTTAAAATATTTATTTTTAAT
TGTTTTAATCTTAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCACAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

97.949

100

0.979