Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   J3Q13_RS06990 Genome accession   NZ_CP071583
Coordinates   1389239..1390420 (-) Length   393 a.a.
NCBI ID   WP_052802771.1    Uniprot ID   A0A5Y9KWV4
Organism   Campylobacter jejuni strain GB60     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1384239..1395420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q13_RS06960 (J3Q13_06960) - 1384784..1385125 (+) 342 WP_002855749.1 hypothetical protein -
  J3Q13_RS06965 (J3Q13_06965) flgM 1385188..1385385 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  J3Q13_RS06970 (J3Q13_06970) - 1385427..1385861 (+) 435 WP_002856482.1 flagellar protein FlgN -
  J3Q13_RS06975 (J3Q13_06975) flgK 1385871..1387697 (+) 1827 WP_002856644.1 flagellar hook-associated protein FlgK -
  J3Q13_RS06980 (J3Q13_06980) - 1387714..1388478 (+) 765 WP_052802770.1 TIGR02757 family protein -
  J3Q13_RS06985 (J3Q13_06985) - 1388482..1389246 (+) 765 WP_002855821.1 TSUP family transporter -
  J3Q13_RS06990 (J3Q13_06990) ctsF 1389239..1390420 (-) 1182 WP_052802771.1 type II secretion system F family protein Machinery gene
  J3Q13_RS06995 (J3Q13_06995) ctsE 1390417..1391976 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  J3Q13_RS07000 (J3Q13_07000) ctsX 1391966..1392553 (-) 588 WP_052802772.1 transformation system protein Machinery gene
  J3Q13_RS07005 (J3Q13_07005) ctsP 1392557..1393165 (-) 609 WP_052802773.1 ATP-binding protein Machinery gene
  J3Q13_RS07010 (J3Q13_07010) ctsD 1393158..1394570 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q13_RS07015 (J3Q13_07015) ctsR 1394548..1394859 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45808.45 Da        Isoelectric Point: 9.2539

>NTDB_id=546595 J3Q13_RS06990 WP_052802771.1 1389239..1390420(-) (ctsF) [Campylobacter jejuni strain GB60]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFKRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=546595 J3Q13_RS06990 WP_052802771.1 1389239..1390420(-) (ctsF) [Campylobacter jejuni strain GB60]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTAAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCCTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y9KWV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985