Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J3Q16_RS03035 Genome accession   NZ_CP071575
Coordinates   590819..591592 (+) Length   257 a.a.
NCBI ID   WP_052822544.1    Uniprot ID   A0A5Z1QH10
Organism   Campylobacter jejuni strain RM3147     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 585819..596592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q16_RS03020 (J3Q16_03020) - 586668..588602 (-) 1935 WP_002866492.1 ribonuclease R family protein -
  J3Q16_RS03025 (J3Q16_03025) ilvC 588721..589743 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  J3Q16_RS03030 (J3Q16_03030) - 589747..590829 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  J3Q16_RS03035 (J3Q16_03035) dprA 590819..591592 (+) 774 WP_052822544.1 DNA-processing protein DprA Machinery gene
  J3Q16_RS03040 (J3Q16_03040) ruvX 591589..591972 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX -
  J3Q16_RS03045 (J3Q16_03045) - 592001..592840 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  J3Q16_RS03050 (J3Q16_03050) msrA 593016..593513 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  J3Q16_RS03055 (J3Q16_03055) ppa 593554..594072 (-) 519 WP_002855031.1 inorganic diphosphatase -
  J3Q16_RS03060 (J3Q16_03060) adk 594082..594660 (-) 579 WP_002855137.1 adenylate kinase -
  J3Q16_RS03065 (J3Q16_03065) aspS 594657..596408 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28754.57 Da        Isoelectric Point: 7.6510

>NTDB_id=546364 J3Q16_RS03035 WP_052822544.1 590819..591592(+) (dprA) [Campylobacter jejuni strain RM3147]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SIAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSIDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=546364 J3Q16_RS03035 WP_052822544.1 590819..591592(+) (dprA) [Campylobacter jejuni strain RM3147]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAACCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTATAGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTATTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z1QH10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.438

99.611

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459