Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LOF66_RS09875 Genome accession   NZ_CP087564
Coordinates   1936763..1937500 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CM2010-0578/1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1931763..1942500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOF66_RS09860 (LOF66_09810) clpC 1932217..1934790 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  LOF66_RS09865 (LOF66_09815) yfiH 1934920..1935651 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  LOF66_RS09870 (LOF66_09820) rluD 1935648..1936628 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOF66_RS09875 (LOF66_09825) comL 1936763..1937500 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LOF66_RS09880 (LOF66_09830) raiA 1937771..1938112 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LOF66_RS09885 (LOF66_09835) pheL 1938216..1938263 (+) 48 WP_010723158.1 phe operon leader peptide -
  LOF66_RS09890 (LOF66_09840) pheA 1938362..1939522 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  LOF66_RS09895 (LOF66_09845) tyrA 1939565..1940686 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LOF66_RS09900 (LOF66_09850) aroF 1940697..1941767 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LOF66_RS09905 (LOF66_09855) yfiL 1941977..1942342 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=546080 LOF66_RS09875 WP_000197686.1 1936763..1937500(+) (comL) [Escherichia coli strain CM2010-0578/1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=546080 LOF66_RS09875 WP_000197686.1 1936763..1937500(+) (comL) [Escherichia coli strain CM2010-0578/1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376