Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   J2N86_RS02625 Genome accession   NZ_CP071527
Coordinates   587965..588624 (+) Length   219 a.a.
NCBI ID   WP_252580788.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 582965..593624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS02600 (J2N86_02600) rplU 583815..584126 (+) 312 WP_058533224.1 50S ribosomal protein L21 -
  J2N86_RS02605 (J2N86_02605) rpmA 584139..584411 (+) 273 WP_252580781.1 50S ribosomal protein L27 -
  J2N86_RS02610 (J2N86_02610) cgtA 584672..585697 (+) 1026 WP_252580783.1 Obg family GTPase CgtA -
  J2N86_RS02615 (J2N86_02615) - 585653..586750 (-) 1098 WP_252580784.1 molybdopterin-binding protein -
  J2N86_RS02620 (J2N86_02620) phhA 586995..587813 (+) 819 WP_252580786.1 phenylalanine 4-monooxygenase -
  J2N86_RS02625 (J2N86_02625) letA 587965..588624 (+) 660 WP_252580788.1 two-component system response regulator LetA Regulator
  J2N86_RS02630 (J2N86_02630) uvrC 588626..590479 (+) 1854 WP_252580790.1 excinuclease ABC subunit UvrC -
  J2N86_RS02635 (J2N86_02635) - 590592..593600 (+) 3009 WP_252580791.1 SidE phosphodiesterase domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24244.22 Da        Isoelectric Point: 5.3913

>NTDB_id=545994 J2N86_RS02625 WP_252580788.1 587965..588624(+) (letA) [Legionella lytica strain PCM 2298]
MIKVLIVDDHALVRMGIRRLLEDLSDVNVVADAESGEQALALVKQHGPDVVLLDMKMPGIDGWEVTRRLKKSNPHVKVIA
VTAMCSDVLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKVAINSLEEVQGSPFNMLSEREMQVMLMI
TSGMTVQEISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGIIENPTDIASED

Nucleotide


Download         Length: 660 bp        

>NTDB_id=545994 J2N86_RS02625 WP_252580788.1 587965..588624(+) (letA) [Legionella lytica strain PCM 2298]
TTGATTAAGGTACTAATTGTTGATGACCATGCATTGGTTAGAATGGGAATTCGACGATTACTTGAAGATTTGTCGGATGT
AAATGTAGTTGCTGACGCTGAAAGCGGTGAGCAAGCTTTAGCATTGGTTAAACAACATGGCCCTGATGTTGTGCTTCTCG
ATATGAAAATGCCGGGCATTGATGGCTGGGAAGTAACCCGCCGCTTAAAAAAATCTAATCCTCATGTGAAAGTAATTGCC
GTGACTGCGATGTGTTCTGATGTCTTGCCTACTCGTGTTTTACAGTTAGGGGCCATGGGCTACCTCACTAAAGAGTCTGG
TGCCGAAGAAATGGCTGCCGCAATACGTAAAGTAGCTAAGGGTGAAAAGTATTTAAGTGCGGAGATTGCCCAGAAAGTGG
CGATTAACAGCTTGGAGGAAGTACAAGGCTCACCTTTTAATATGCTATCAGAGCGCGAAATGCAGGTGATGCTCATGATC
ACTAGCGGGATGACCGTTCAAGAGATTAGCGACCGATTGTTTCTGAGCACCAAAACAATTAATGGATATCGTTATCGTAC
TTTTGAAAAGCTGGGCATTAAAAATGATGTTGAGCTGACCTATCTTGCGTTAAAACACGGAATTATCGAAAACCCAACTG
ATATAGCATCAGAAGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

86.758

100

0.868
  letA Legionella pneumophila strain ERS1305867

86.758

100

0.868