Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LOZ87_RS07740 Genome accession   NZ_CP087391
Coordinates   1509084..1510106 (+) Length   340 a.a.
NCBI ID   WP_007409697.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504084..1515106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS07700 (LOZ87_07700) - 1504447..1504686 (+) 240 WP_039063037.1 YlbE-like family protein -
  LOZ87_RS07705 (LOZ87_07705) ylbF 1504757..1505206 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  LOZ87_RS07710 (LOZ87_07710) - 1505265..1505537 (+) 273 WP_003154470.1 YlbG family protein -
  LOZ87_RS07715 (LOZ87_07715) - 1505628..1505837 (+) 210 WP_007409692.1 hypothetical protein -
  LOZ87_RS07720 (LOZ87_07720) rsmD 1505837..1506391 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LOZ87_RS07725 (LOZ87_07725) coaD 1506396..1506878 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  LOZ87_RS07730 (LOZ87_07730) ylbJ 1506897..1508123 (-) 1227 WP_039063039.1 sporulation integral membrane protein YlbJ -
  LOZ87_RS07735 (LOZ87_07735) - 1508299..1509078 (+) 780 WP_014304961.1 patatin family protein -
  LOZ87_RS07740 (LOZ87_07740) sepM 1509084..1510106 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator
  LOZ87_RS07745 (LOZ87_07745) - 1510125..1511372 (-) 1248 WP_039063040.1 nucleotidyltransferase -
  LOZ87_RS07750 (LOZ87_07750) - 1511581..1512099 (+) 519 WP_007409699.1 YceD family protein -
  LOZ87_RS07755 (LOZ87_07755) rpmF 1512121..1512300 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  LOZ87_RS07760 (LOZ87_07760) gerR 1512458..1513033 (+) 576 WP_039063041.1 sporulation-specific transcriptional regulator GerR -
  LOZ87_RS07765 (LOZ87_07765) - 1513074..1513556 (-) 483 WP_007409700.1 N-acetyltransferase -
  LOZ87_RS07770 (LOZ87_07770) - 1513719..1514600 (+) 882 WP_039063043.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37448.99 Da        Isoelectric Point: 7.3837

>NTDB_id=545968 LOZ87_RS07740 WP_007409697.1 1509084..1510106(+) (sepM) [Bacillus amyloliquefaciens strain ZF57]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYEEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=545968 LOZ87_RS07740 WP_007409697.1 1509084..1510106(+) (sepM) [Bacillus amyloliquefaciens strain ZF57]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGAAGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGCATTTATGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGTGTCGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAAATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(127-193)

Peptidase family M50 (Peptidase_M50)

(99-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.953

100

0.394