Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   LOZ87_RS07705 Genome accession   NZ_CP087391
Coordinates   1504757..1505206 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499757..1510206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS07665 (LOZ87_07665) ctaE 1499875..1500498 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  LOZ87_RS07670 (LOZ87_07670) ctaF 1500501..1500833 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  LOZ87_RS07675 (LOZ87_07675) ctaG 1500858..1501742 (+) 885 WP_103715899.1 cytochrome c oxidase assembly factor CtaG -
  LOZ87_RS07680 (LOZ87_07680) - 1501777..1502136 (-) 360 WP_007409688.1 YugN family protein -
  LOZ87_RS07685 (LOZ87_07685) - 1502277..1502720 (+) 444 WP_039063034.1 CBS domain-containing protein -
  LOZ87_RS07690 (LOZ87_07690) - 1502805..1503845 (+) 1041 WP_039063036.1 CAP domain-containing protein -
  LOZ87_RS07695 (LOZ87_07695) - 1504021..1504431 (+) 411 WP_007409691.1 YlbD family protein -
  LOZ87_RS07700 (LOZ87_07700) - 1504447..1504686 (+) 240 WP_039063037.1 YlbE-like family protein -
  LOZ87_RS07705 (LOZ87_07705) ylbF 1504757..1505206 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  LOZ87_RS07710 (LOZ87_07710) - 1505265..1505537 (+) 273 WP_003154470.1 YlbG family protein -
  LOZ87_RS07715 (LOZ87_07715) - 1505628..1505837 (+) 210 WP_007409692.1 hypothetical protein -
  LOZ87_RS07720 (LOZ87_07720) rsmD 1505837..1506391 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LOZ87_RS07725 (LOZ87_07725) coaD 1506396..1506878 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  LOZ87_RS07730 (LOZ87_07730) ylbJ 1506897..1508123 (-) 1227 WP_039063039.1 sporulation integral membrane protein YlbJ -
  LOZ87_RS07735 (LOZ87_07735) - 1508299..1509078 (+) 780 WP_014304961.1 patatin family protein -
  LOZ87_RS07740 (LOZ87_07740) sepM 1509084..1510106 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=545967 LOZ87_RS07705 WP_003154472.1 1504757..1505206(+) (ylbF) [Bacillus amyloliquefaciens strain ZF57]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=545967 LOZ87_RS07705 WP_003154472.1 1504757..1505206(+) (ylbF) [Bacillus amyloliquefaciens strain ZF57]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879