Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   J3P57_RS07055 Genome accession   NZ_CP071519
Coordinates   1392578..1393759 (-) Length   393 a.a.
NCBI ID   WP_002910983.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1245     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387578..1398759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3P57_RS07025 (J3P57_07025) - 1388124..1388465 (+) 342 WP_002855749.1 hypothetical protein -
  J3P57_RS07030 (J3P57_07030) flgM 1388528..1388725 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  J3P57_RS07035 (J3P57_07035) - 1388767..1389201 (+) 435 WP_002856482.1 flagellar protein FlgN -
  J3P57_RS07040 (J3P57_07040) flgK 1389211..1391037 (+) 1827 WP_002856644.1 flagellar hook-associated protein FlgK -
  J3P57_RS07045 (J3P57_07045) - 1391054..1391818 (+) 765 WP_002910984.1 TIGR02757 family protein -
  J3P57_RS07050 (J3P57_07050) - 1391822..1392585 (+) 764 Protein_1376 TSUP family transporter -
  J3P57_RS07055 (J3P57_07055) ctsF 1392578..1393759 (-) 1182 WP_002910983.1 type II secretion system F family protein Machinery gene
  J3P57_RS07060 (J3P57_07060) ctsE 1393756..1395314 (-) 1559 Protein_1378 GspE/PulE family protein -
  J3P57_RS07065 (J3P57_07065) ctsX 1395304..1395891 (-) 588 WP_002851370.1 membrane protein Machinery gene
  J3P57_RS07070 (J3P57_07070) ctsP 1395895..1396503 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  J3P57_RS07075 (J3P57_07075) ctsD 1396496..1397908 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3P57_RS07080 (J3P57_07080) ctsR 1397886..1398197 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45804.46 Da        Isoelectric Point: 9.3898

>NTDB_id=545939 J3P57_RS07055 WP_002910983.1 1392578..1393759(-) (ctsF) [Campylobacter jejuni strain RM1245]
MKFYEVEFLKNNQNYTKTIKAENLNIAQTKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSRAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEHMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=545939 J3P57_RS07055 WP_002910983.1 1392578..1393759(-) (ctsF) [Campylobacter jejuni strain RM1245]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAACAAAAGCCTTATCAAAAAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATAGCTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCGGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCATATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.449

99.746

0.972