Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   J3P57_RS07080 Genome accession   NZ_CP071519
Coordinates   1397886..1398197 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain RM1245     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392886..1403197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3P57_RS07060 (J3P57_07060) ctsE 1393756..1395314 (-) 1559 Protein_1378 GspE/PulE family protein -
  J3P57_RS07065 (J3P57_07065) ctsX 1395304..1395891 (-) 588 WP_002851370.1 membrane protein Machinery gene
  J3P57_RS07070 (J3P57_07070) ctsP 1395895..1396503 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  J3P57_RS07075 (J3P57_07075) ctsD 1396496..1397908 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3P57_RS07080 (J3P57_07080) ctsR 1397886..1398197 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  J3P57_RS07085 (J3P57_07085) nifJ 1398221..1401781 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  J3P57_RS07090 (J3P57_07090) - 1401875..1402516 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=545943 J3P57_RS07080 WP_002855438.1 1397886..1398197(-) (ctsR) [Campylobacter jejuni strain RM1245]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=545943 J3P57_RS07080 WP_002855438.1 1397886..1398197(-) (ctsR) [Campylobacter jejuni strain RM1245]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1