Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPAKL86_RS00855 Genome accession   NC_019563
Coordinates   160277..160558 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori Aklavik86     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 155277..165558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL86_RS00840 (HPAKL86_00820) - 156001..157431 (-) 1431 WP_162470535.1 COG3014 family protein -
  HPAKL86_RS00845 (HPAKL86_00825) comB4 157649..160012 (-) 2364 WP_015086647.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPAKL86_RS00850 (HPAKL86_00830) comB3 160014..160277 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  HPAKL86_RS00855 (HPAKL86_00835) comB2 160277..160558 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPAKL86_RS00860 (HPAKL86_00840) - 160946..161935 (-) 990 WP_412091904.1 cytochrome-c peroxidase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=54589 HPAKL86_RS00855 WP_001272686.1 160277..160558(-) (comB2) [Helicobacter pylori Aklavik86]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=54589 HPAKL86_RS00855 WP_001272686.1 160277..160558(-) (comB2) [Helicobacter pylori Aklavik86]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCTCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACAATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment