Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPAKL86_RS00600 | Genome accession | NC_019563 |
| Coordinates | 112190..112765 (+) | Length | 191 a.a. |
| NCBI ID | WP_015086604.1 | Uniprot ID | K7Y800 |
| Organism | Helicobacter pylori Aklavik86 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 107190..117765
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPAKL86_RS00575 (HPAKL86_00545) | uvrD | 107879..109918 (+) | 2040 | WP_015086600.1 | DNA helicase UvrD | - |
| HPAKL86_RS00580 (HPAKL86_00550) | flgA | 109915..110571 (+) | 657 | WP_015086601.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPAKL86_RS00585 (HPAKL86_00560) | - | 110581..111144 (+) | 564 | WP_000780116.1 | UbiX family flavin prenyltransferase | - |
| HPAKL86_RS00590 (HPAKL86_00565) | coaD | 111144..111617 (+) | 474 | WP_015086602.1 | pantetheine-phosphate adenylyltransferase | - |
| HPAKL86_RS00595 (HPAKL86_00570) | tmk | 111627..112202 (+) | 576 | WP_015086603.1 | dTMP kinase | - |
| HPAKL86_RS00600 (HPAKL86_00575) | comFC | 112190..112765 (+) | 576 | WP_015086604.1 | ComF family protein | Machinery gene |
| HPAKL86_RS00605 (HPAKL86_00580) | - | 112798..114837 (+) | 2040 | WP_015086605.1 | class I SAM-dependent DNA methyltransferase | - |
| HPAKL86_RS00610 | - | 114834..115472 (+) | 639 | WP_041200218.1 | restriction endonuclease subunit S | - |
| HPAKL86_RS00615 | - | 115499..116077 (+) | 579 | WP_041200219.1 | restriction endonuclease | - |
| HPAKL86_RS00620 (HPAKL86_00595) | - | 116218..117066 (+) | 849 | WP_015086606.1 | biotin synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21255.86 Da Isoelectric Point: 9.4455
>NTDB_id=54585 HPAKL86_RS00600 WP_015086604.1 112190..112765(+) (comFC) [Helicobacter pylori Aklavik86]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAKFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNTISYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAKFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNTISYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=54585 HPAKL86_RS00600 WP_015086604.1 112190..112765(+) (comFC) [Helicobacter pylori Aklavik86]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAAAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTATGGGCGTTTAAGGGCTTCTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTCTAAACATAAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAAAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTATGGGCGTTTAAGGGCTTCTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTCTAAACATAAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |