Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   J2N84_RS08540 Genome accession   NZ_CP071508
Coordinates   1729950..1730534 (+) Length   194 a.a.
NCBI ID   WP_207323468.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain 7b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1724950..1735534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N84_RS08515 (J2N84_08515) - 1725706..1727073 (-) 1368 WP_207323465.1 isochorismate synthase -
  J2N84_RS08520 (J2N84_08520) - 1727253..1728191 (+) 939 WP_207323466.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  J2N84_RS08525 (J2N84_08525) - 1728291..1728845 (-) 555 WP_207323467.1 GNAT family N-acetyltransferase -
  J2N84_RS08530 (J2N84_08530) - 1729030..1729260 (+) 231 WP_011276193.1 TM2 domain-containing protein -
  J2N84_RS12060 - 1729339..1729440 (+) 102 WP_011276194.1 SAR1012 family small protein -
  J2N84_RS08535 (J2N84_08535) - 1729517..1729735 (-) 219 WP_037549198.1 IDEAL domain-containing protein -
  J2N84_RS08540 (J2N84_08540) comK/comK1 1729950..1730534 (+) 585 WP_207323468.1 competence protein ComK Regulator
  J2N84_RS08555 (J2N84_08555) - 1731114..1731665 (+) 552 WP_207323469.1 Ltp family lipoprotein -
  J2N84_RS08560 (J2N84_08560) - 1731712..1732701 (-) 990 WP_207323470.1 lipoate--protein ligase -
  J2N84_RS08565 (J2N84_08565) - 1732902..1733078 (+) 177 WP_070441302.1 DUF2187 family protein -
  J2N84_RS08570 (J2N84_08570) - 1733095..1733697 (+) 603 WP_011276203.1 CPBP family glutamic-type intramembrane protease -
  J2N84_RS08575 (J2N84_08575) - 1733780..1735291 (-) 1512 WP_070441306.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22968.41 Da        Isoelectric Point: 9.2942

>NTDB_id=545840 J2N84_RS08540 WP_207323468.1 1729950..1730534(+) (comK/comK1) [Staphylococcus haemolyticus strain 7b]
MPNISQSQNTVYIIRKGDMIIKPVIDDYEQTKGSEIWKYDSTIVSSPFKTQKIVERSCKFYGNSYISKKSETQRIAGITS
KPPILLTPLFPTYFFPAHSDRLEENMWINMHYVHEIKPLKNRKCKIIFANHQTLTLNVSYHSIWHQYSNCIFYYYMVDKQ
SRMKSNNPEMPIDYEKTTLNIFEALSHYSLLQDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=545840 J2N84_RS08540 WP_207323468.1 1729950..1730534(+) (comK/comK1) [Staphylococcus haemolyticus strain 7b]
ATGCCAAATATTTCTCAAAGCCAAAATACTGTATATATTATTCGAAAAGGAGATATGATAATCAAACCCGTCATTGATGA
TTATGAGCAAACAAAAGGATCTGAAATATGGAAATATGATTCCACAATAGTTTCAAGCCCATTCAAAACTCAAAAAATCG
TCGAACGCTCATGTAAATTTTATGGTAATAGCTATATTAGTAAGAAATCAGAAACACAACGAATTGCCGGCATTACTAGT
AAACCACCTATTTTATTGACTCCTCTCTTCCCCACTTATTTTTTCCCTGCGCATTCAGACCGTTTAGAAGAAAACATGTG
GATAAATATGCATTATGTACATGAAATTAAGCCTCTTAAAAATCGAAAATGTAAAATTATTTTTGCAAATCATCAAACAT
TAACACTTAATGTTTCCTACCACAGTATTTGGCACCAATACTCTAACTGCATTTTTTATTATTACATGGTCGATAAACAA
TCTCGTATGAAGTCAAACAATCCAGAAATGCCAATTGATTATGAAAAAACGACTTTAAATATTTTCGAAGCACTTTCCCA
TTATTCACTATTACAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

68.085

96.907

0.66
  comK/comK1 Staphylococcus aureus N315

68.085

96.907

0.66