Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J2N82_RS07570 Genome accession   NZ_CP071505
Coordinates   1527932..1528798 (-) Length   288 a.a.
NCBI ID   WP_070442298.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain 12b     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1522932..1533798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N82_RS07560 (J2N82_07560) trmFO 1524353..1525660 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J2N82_RS07565 (J2N82_07565) topA 1525684..1527753 (-) 2070 WP_207323399.1 type I DNA topoisomerase -
  J2N82_RS07570 (J2N82_07570) dprA 1527932..1528798 (-) 867 WP_070442298.1 DNA-processing protein DprA Machinery gene
  J2N82_RS07575 (J2N82_07575) - 1529017..1530247 (-) 1231 Protein_1470 aminoacyltransferase -
  J2N82_RS11965 - 1530278..1530530 (-) 253 Protein_1471 CHAP domain-containing protein -
  J2N82_RS07585 (J2N82_07585) sucD 1530877..1531782 (-) 906 WP_037551652.1 succinate--CoA ligase subunit alpha -
  J2N82_RS07590 (J2N82_07590) sucC 1531804..1532970 (-) 1167 WP_053017080.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33172.20 Da        Isoelectric Point: 9.0618

>NTDB_id=545806 J2N82_RS07570 WP_070442298.1 1527932..1528798(-) (dprA) [Staphylococcus haemolyticus strain 12b]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFKFSYTDQIDTIRNWDRMFHNDDFIDKFNNLNEKDILSFLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPLLLTFSNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPLTSVRRYHFPQRNRLISGLSKGVLITEASVRSGSQIT
IDCALEQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=545806 J2N82_RS07570 WP_070442298.1 1527932..1528798(-) (dprA) [Staphylococcus haemolyticus strain 12b]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGCTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTAAATTCTCTTATACTGATCAAATAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGACG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCATTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGTTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCT
TTTATTAACATTCTCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCTGGTTTGGCAAAAGGTGCTGATAGCATAGCACATCATTTT
GCTATAGAGTATCAATTACCTACAATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCACTTACTAGTGTTAGGCGATATCACTTTCCGC
AACGCAATCGTTTGATAAGCGGTCTTTCAAAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGTGCATTAGAGCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACAAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCTGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.632

98.958

0.521
  dprA Staphylococcus aureus N315

52.632

98.958

0.521