Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPAKL117_RS07040 | Genome accession | NC_019560 |
| Coordinates | 1456008..1456583 (-) | Length | 191 a.a. |
| NCBI ID | WP_015086367.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Aklavik117 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1451008..1461583
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPAKL117_RS07030 (HPAKL117_07060) | - | 1452743..1453939 (-) | 1197 | WP_015086365.1 | restriction endonuclease subunit S | - |
| HPAKL117_RS07035 (HPAKL117_07065) | - | 1453936..1455975 (-) | 2040 | WP_015086366.1 | class I SAM-dependent DNA methyltransferase | - |
| HPAKL117_RS07040 (HPAKL117_07070) | comFC | 1456008..1456583 (-) | 576 | WP_015086367.1 | ComF family protein | Machinery gene |
| HPAKL117_RS07045 (HPAKL117_07075) | tmk | 1456571..1457146 (-) | 576 | WP_015086368.1 | dTMP kinase | - |
| HPAKL117_RS07050 (HPAKL117_07080) | coaD | 1457148..1457621 (-) | 474 | WP_015086369.1 | pantetheine-phosphate adenylyltransferase | - |
| HPAKL117_RS07055 (HPAKL117_07085) | - | 1457621..1458184 (-) | 564 | WP_015086370.1 | UbiX family flavin prenyltransferase | - |
| HPAKL117_RS07060 (HPAKL117_07095) | flgA | 1458194..1458850 (-) | 657 | WP_015086371.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPAKL117_RS07065 (HPAKL117_07100) | uvrD | 1458847..1460886 (-) | 2040 | WP_015086372.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21325.95 Da Isoelectric Point: 9.7038
>NTDB_id=54577 HPAKL117_RS07040 WP_015086367.1 1456008..1456583(-) (comFC) [Helicobacter pylori Aklavik117]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAKFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNSVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAKFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNSVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=54577 HPAKL117_RS07040 WP_015086367.1 1456008..1456583(-) (comFC) [Helicobacter pylori Aklavik117]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATCTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAAAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATTCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCACTTTGCAATCGCGCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATCTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAAAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATTCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCACTTTGCAATCGCGCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |