Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LO008_RS18625 Genome accession   NZ_CP087351
Coordinates   3827226..3827861 (-) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain DB003     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3822226..3832861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO008_RS18610 - 3823013..3824197 (+) 1185 WP_000939109.1 S41 family peptidase -
  LO008_RS18615 - 3824201..3825622 (-) 1422 WP_000840548.1 sigma-54 dependent transcriptional regulator -
  LO008_RS18620 pilS 3825647..3827215 (-) 1569 WP_001160337.1 PAS domain-containing sensor histidine kinase Regulator
  LO008_RS18625 letA 3827226..3827861 (-) 636 WP_000633799.1 response regulator Regulator
  LO008_RS18630 pbpG 3828074..3829120 (+) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LO008_RS18635 thrC 3829229..3830368 (-) 1140 WP_000063593.1 threonine synthase -
  LO008_RS18640 - 3830424..3831725 (-) 1302 WP_000805827.1 homoserine dehydrogenase -
  LO008_RS18645 - 3831970..3832785 (-) 816 WP_000011168.1 DsbC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=545741 LO008_RS18625 WP_000633799.1 3827226..3827861(-) (letA) [Acinetobacter baumannii strain DB003]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545741 LO008_RS18625 WP_000633799.1 3827226..3827861(-) (letA) [Acinetobacter baumannii strain DB003]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTTGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55