Detailed information NTG0545729

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JYB85_RS16895
• Genome accession: NZ_CP071502
• Coordinates: 3784503..3785417 (+)
• Length: 304 a.a.
• NCBI ID: WP_207380213.1
• Uniprot ID: -
• Organism: Shewanella sedimentimangrovi strain FJAT-52962
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3779503..3790417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYB85_RS16880 (JYB85_16880)	-	3780977..3781375 (+)	399	WP_207380210.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
JYB85_RS16885 (JYB85_16885)	pilB	3781461..3783170 (+)	1710	WP_207380211.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JYB85_RS16890 (JYB85_16890)	pilC	3783209..3784477 (+)	1269	WP_207380212.1	type II secretion system F family protein	Machinery gene
JYB85_RS16895 (JYB85_16895)	pilD	3784503..3785417 (+)	915	WP_207380213.1	A24 family peptidase	Machinery gene
JYB85_RS16900 (JYB85_16900)	coaE	3785426..3786031 (+)	606	WP_207380214.1	dephospho-CoA kinase	-
JYB85_RS16905 (JYB85_16905)	zapD	3786038..3786772 (+)	735	WP_207321102.1	cell division protein ZapD	-
JYB85_RS16910 (JYB85_16910)	yacG	3786819..3787028 (+)	210	WP_207321103.1	DNA gyrase inhibitor YacG	-
JYB85_RS16915 (JYB85_16915)	mutT	3787035..3787430 (+)	396	WP_207321104.1	8-oxo-dGTP diphosphatase MutT	-
JYB85_RS16920 (JYB85_16920)	-	3787627..3788364 (+)	738	WP_207380215.1	ABC transporter substrate-binding protein	-
JYB85_RS16925 (JYB85_16925)	ric	3788622..3789323 (+)	702	WP_207380216.1	iron-sulfur cluster repair di-iron protein	-
JYB85_RS16930 (JYB85_16930)	-	3789403..3789894 (+)	492	WP_207380217.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33929.30 Da
• Isoelectric Point: 7.0080

>NTDB_id=545729 JYB85_RS16895 WP_207380213.1 3784503..3785417(+) (pilD) [Shewanella sedimentimangrovi strain FJAT-52962]
MNNIIDVLSQSPWLFEVMSFIFAACIGSFLNVVIHRFPVMLKREWQQECNQYLSEYHPALVAKVGAAELQKPIDNYPSKY
NLIVPASRCPKCHSSIKAWHNLPILGWMLLKGKCANCQTPISARYPIVEALTGITVATLAWHFGPSWQFLLAALLTFGLI
AMAGIDLDEMLLPDQITLPWLWLGLLANLNHQFVGIEDALIGAMAGYLSLWSVYWLFKILTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGITMMLSKKLSRENPIPFGPYIAAAGWIALIWGQDIVDWYLAGL

Nucleotide

• Length: 915 bp

>NTDB_id=545729 JYB85_RS16895 WP_207380213.1 3784503..3785417(+) (pilD) [Shewanella sedimentimangrovi strain FJAT-52962]
ATGAATAATATTATTGACGTATTAAGCCAATCTCCTTGGCTGTTTGAAGTAATGAGTTTTATATTCGCTGCCTGCATTGG
CAGCTTTCTCAATGTGGTCATTCATCGCTTCCCTGTGATGCTGAAGCGTGAATGGCAGCAGGAGTGCAATCAGTATTTGA
GCGAGTATCATCCAGCCTTGGTCGCCAAAGTGGGCGCGGCTGAGCTGCAAAAGCCAATTGATAATTACCCGAGCAAATAT
AATCTGATTGTACCGGCATCACGCTGTCCCAAATGTCACAGCAGCATTAAGGCCTGGCATAATTTGCCTATCCTTGGCTG
GATGCTACTTAAAGGGAAGTGCGCCAACTGCCAGACTCCAATATCGGCCAGATATCCGATAGTCGAAGCCTTAACCGGCA
TTACAGTCGCAACACTGGCCTGGCATTTCGGCCCCAGCTGGCAGTTTTTATTGGCTGCGCTGTTAACTTTTGGCTTGATA
GCCATGGCCGGAATAGATTTAGACGAAATGTTGTTGCCGGACCAAATAACACTGCCATGGTTGTGGCTCGGTTTGCTGGC
GAATCTCAACCATCAATTTGTCGGGATTGAAGATGCCCTTATTGGCGCAATGGCCGGCTATCTGTCGCTCTGGTCCGTAT
ATTGGTTATTCAAAATACTCACGGGCAAGGAAGGCATGGGCTATGGCGATTTTAAGCTGATGGCCCTGTTCGGCGCTTGG
CTTGGCTGGCAAATGCTGCCGCTCATTATCTTGCTCTCATCTCTTGTTGGCGCCCTAGTGGGAATCACCATGATGCTGAG
TAAAAAACTCTCCCGTGAAAACCCCATTCCCTTCGGTCCCTATATTGCGGCAGCCGGCTGGATAGCCTTGATTTGGGGAC
AAGACATAGTTGACTGGTACCTCGCCGGTCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.502	99.013	0.49
pilD	Vibrio cholerae strain A1552	49.829	96.382	0.48
pilD	Acinetobacter nosocomialis M2	46.382	100	0.464
pilD	Acinetobacter baumannii D1279779	45.724	100	0.457
pilD	Neisseria gonorrhoeae MS11	43.214	92.105	0.398