Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPAKL117_RS01665 Genome accession   NC_019560
Coordinates   335718..336122 (+) Length   134 a.a.
NCBI ID   WP_015085529.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 330718..341122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL117_RS01630 (HPAKL117_01625) - 330897..331835 (-) 939 WP_015085525.1 tetraacyldisaccharide 4'-kinase -
  HPAKL117_RS01635 (HPAKL117_01630) - 331832..332614 (-) 783 WP_015085526.1 NAD+ synthase -
  HPAKL117_RS01645 (HPAKL117_01635) ilvC 332862..333854 (+) 993 WP_015085527.1 ketol-acid reductoisomerase -
  HPAKL117_RS01650 (HPAKL117_01640) minD 333873..334679 (+) 807 WP_001019043.1 septum site-determining protein MinD -
  HPAKL117_RS01655 (HPAKL117_01645) minE 334676..334909 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HPAKL117_RS01660 (HPAKL117_01650) dprA 334921..335721 (+) 801 WP_015085528.1 DNA-processing protein DprA Machinery gene
  HPAKL117_RS01665 (HPAKL117_01655) dprB 335718..336122 (+) 405 WP_015085529.1 Holliday junction resolvase RuvX Machinery gene
  HPAKL117_RS01670 (HPAKL117_01665) - 336249..336914 (+) 666 WP_015085531.1 tetratricopeptide repeat protein -
  HPAKL117_RS01675 (HPAKL117_01670) - 337109..337447 (+) 339 WP_000699911.1 hypothetical protein -
  HPAKL117_RS01680 (HPAKL117_01675) - 337431..337991 (+) 561 WP_015085532.1 hypothetical protein -
  HPAKL117_RS01685 (HPAKL117_01680) - 338156..339037 (-) 882 WP_015085533.1 RluA family pseudouridine synthase -
  HPAKL117_RS01690 (HPAKL117_01685) recJ 339037..340587 (-) 1551 WP_015085534.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15292.77 Da        Isoelectric Point: 8.6995

>NTDB_id=54567 HPAKL117_RS01665 WP_015085529.1 335718..336122(+) (dprB) [Helicobacter pylori Aklavik117]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFIDEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=54567 HPAKL117_RS01665 WP_015085529.1 335718..336122(+) (dprB) [Helicobacter pylori Aklavik117]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGTATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTGATGAAGATAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955

Multiple sequence alignment