Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LO006_RS17610 Genome accession   NZ_CP087348
Coordinates   3621597..3622232 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain DB006     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616597..3627232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS17590 - 3616675..3617490 (+) 816 WP_000011159.1 DsbC family protein -
  LO006_RS17595 - 3617735..3619036 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  LO006_RS17600 thrC 3619092..3620231 (+) 1140 WP_258580050.1 threonine synthase -
  LO006_RS17605 pbpG 3620338..3621384 (-) 1047 WP_003384760.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LO006_RS17610 letA 3621597..3622232 (+) 636 WP_000633799.1 response regulator Regulator
  LO006_RS17615 pilS 3622243..3623811 (+) 1569 WP_001160333.1 PAS domain-containing sensor histidine kinase Regulator
  LO006_RS17620 - 3623836..3625257 (+) 1422 WP_000840549.1 sigma-54 dependent transcriptional regulator -
  LO006_RS17625 - 3625261..3626445 (-) 1185 WP_000942504.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=545668 LO006_RS17610 WP_000633799.1 3621597..3622232(+) (letA) [Acinetobacter baumannii strain DB006]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545668 LO006_RS17610 WP_000633799.1 3621597..3622232(+) (letA) [Acinetobacter baumannii strain DB006]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCAGGCATCGGTGGTGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAACCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55