Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   J1G54_RS03690 Genome accession   NZ_CP071491
Coordinates   678163..678504 (+) Length   113 a.a.
NCBI ID   WP_021114623.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 673163..683504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS03670 (J1G54_03670) - 673708..676263 (-) 2556 WP_021119495.1 penicillin-binding protein 1A -
  J1G54_RS03675 (J1G54_03675) comA 676417..677094 (+) 678 WP_021113429.1 hypothetical protein Machinery gene
  J1G54_RS03680 (J1G54_03680) comB 677070..677591 (+) 522 WP_021113427.1 hypothetical protein Machinery gene
  J1G54_RS03685 (J1G54_03685) comC 677588..678118 (+) 531 WP_021113425.1 hypothetical protein Machinery gene
  J1G54_RS03690 (J1G54_03690) comD 678163..678504 (+) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  J1G54_RS03695 (J1G54_03695) comE 678514..679776 (+) 1263 WP_160404856.1 type IV pilus secretin PilQ Machinery gene
  J1G54_RS03700 (J1G54_03700) nusB 679855..680268 (+) 414 WP_021116599.1 transcription antitermination factor NusB -
  J1G54_RS03705 (J1G54_03705) thiL 680277..681245 (+) 969 WP_021112073.1 thiamine-phosphate kinase -
  J1G54_RS03710 (J1G54_03710) - 681248..681718 (+) 471 WP_021113432.1 phosphatidylglycerophosphatase A -
  J1G54_RS03715 (J1G54_03715) - 681720..682349 (+) 630 WP_015940164.1 LysE family transporter -
  J1G54_RS03720 (J1G54_03720) trxA 682646..682960 (+) 315 WP_015940165.1 thioredoxin -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13165.91 Da        Isoelectric Point: 4.8436

>NTDB_id=545666 J1G54_RS03690 WP_021114623.1 678163..678504(+) (comD) [Glaesserella parasuis strain GHP1807]
MADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=545666 J1G54_RS03690 WP_021114623.1 678163..678504(+) (comD) [Glaesserella parasuis strain GHP1807]
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTG
TATGCCAACGGACAAGGTGAATGAAATTAATCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ATGATAAAATCCGAGCCATTTTTTTAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

98.23

100

0.982