Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   J1G53_RS07760 Genome accession   NZ_CP071490
Coordinates   1576839..1577180 (-) Length   113 a.a.
NCBI ID   WP_010786294.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1571839..1582180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS07740 (J1G53_07740) prfB 1572784..1573882 (+) 1099 WP_207342445.1 peptide chain release factor 2 -
  J1G53_RS07745 (J1G53_07745) cmoB 1573972..1574934 (-) 963 WP_075592690.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  J1G53_RS07750 (J1G53_07750) - 1575057..1576154 (-) 1098 WP_015939610.1 ISAs1 family transposase -
  J1G53_RS07755 (J1G53_07755) - 1576291..1576739 (+) 449 Protein_1512 IS5 family transposase -
  J1G53_RS07760 (J1G53_07760) comEA/comE1 1576839..1577180 (-) 342 WP_010786294.1 ComEA family DNA-binding protein Machinery gene
  J1G53_RS07765 (J1G53_07765) - 1577438..1578703 (+) 1266 WP_005714013.1 LysM-like peptidoglycan-binding domain-containing protein -
  J1G53_RS07770 (J1G53_07770) - 1578763..1579161 (+) 399 WP_005714011.1 MliC family protein -
  J1G53_RS07775 (J1G53_07775) waaF 1579170..1580222 (+) 1053 WP_207342446.1 lipopolysaccharide heptosyltransferase II -
  J1G53_RS07780 (J1G53_07780) - 1580318..1580905 (+) 588 WP_010786297.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12407.27 Da        Isoelectric Point: 9.8972

>NTDB_id=545649 J1G53_RS07760 WP_010786294.1 1576839..1577180(-) (comEA/comE1) [Glaesserella parasuis strain GHP1808]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=545649 J1G53_RS07760 WP_010786294.1 1576839..1577180(-) (comEA/comE1) [Glaesserella parasuis strain GHP1808]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

98.23

100

0.982
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602