Detailed information
Bioinformatically predicted
Overview
| Name | comB9 | Type | Machinery gene |
| Locus tag | HPAKL117_RS00205 | Genome accession | NC_019560 |
| Coordinates | 36374..37342 (+) | Length | 322 a.a. |
| NCBI ID | WP_015085303.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Aklavik117 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 31374..42342
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPAKL117_RS00175 (HPAKL117_00150) | panD | 32799..33149 (+) | 351 | WP_000142282.1 | aspartate 1-decarboxylase | - |
| HPAKL117_RS00180 (HPAKL117_00155) | - | 33160..33453 (+) | 294 | WP_015085299.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPAKL117_RS00185 (HPAKL117_00160) | - | 33453..34448 (+) | 996 | WP_015085300.1 | PDZ domain-containing protein | - |
| HPAKL117_RS00190 (HPAKL117_00165) | comB6 | 34456..35511 (+) | 1056 | WP_015085301.1 | type IV secretion system protein | Machinery gene |
| HPAKL117_RS00195 (HPAKL117_00170) | comB7 | 35527..35640 (+) | 114 | WP_001217868.1 | hypothetical protein | Machinery gene |
| HPAKL117_RS00200 (HPAKL117_00175) | comB8 | 35637..36374 (+) | 738 | WP_015085302.1 | type IV secretion system protein | Machinery gene |
| HPAKL117_RS00205 (HPAKL117_00180) | comB9 | 36374..37342 (+) | 969 | WP_015085303.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPAKL117_RS00210 (HPAKL117_00185) | comB10 | 37335..38471 (+) | 1137 | WP_015085304.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPAKL117_RS00215 (HPAKL117_00190) | - | 38538..39950 (+) | 1413 | WP_015085305.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPAKL117_RS00220 (HPAKL117_00195) | gmd | 39964..41109 (+) | 1146 | WP_015085306.1 | GDP-mannose 4,6-dehydratase | - |
| HPAKL117_RS00225 (HPAKL117_00200) | - | 41102..42034 (+) | 933 | WP_015085307.1 | GDP-L-fucose synthase family protein | - |
Sequence
Protein
Download Length: 322 a.a. Molecular weight: 37154.90 Da Isoelectric Point: 9.3713
>NTDB_id=54562 HPAKL117_RS00205 WP_015085303.1 36374..37342(+) (comB9) [Helicobacter pylori Aklavik117]
MRKVLCALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIKENTLEKAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGK
DE
MRKVLCALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIKENTLEKAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGK
DE
Nucleotide
Download Length: 969 bp
>NTDB_id=54562 HPAKL117_RS00205 WP_015085303.1 36374..37342(+) (comB9) [Helicobacter pylori Aklavik117]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAATGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
CAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAAACTATAACCATTGGCGATAACACGAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCT
CTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTA
TCGCTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAA
GATGAATAA
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAATGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
CAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAAACTATAACCATTGGCGATAACACGAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCT
CTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTA
TCGCTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAA
GATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB9 | Helicobacter pylori P1 |
93.558 |
100 |
0.947 |