Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPAKL117_RS00200 Genome accession   NC_019560
Coordinates   35637..36374 (+) Length   245 a.a.
NCBI ID   WP_015085302.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik117     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30637..41374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL117_RS00175 (HPAKL117_00150) panD 32799..33149 (+) 351 WP_000142282.1 aspartate 1-decarboxylase -
  HPAKL117_RS00180 (HPAKL117_00155) - 33160..33453 (+) 294 WP_015085299.1 YbaB/EbfC family nucleoid-associated protein -
  HPAKL117_RS00185 (HPAKL117_00160) - 33453..34448 (+) 996 WP_015085300.1 PDZ domain-containing protein -
  HPAKL117_RS00190 (HPAKL117_00165) comB6 34456..35511 (+) 1056 WP_015085301.1 type IV secretion system protein Machinery gene
  HPAKL117_RS00195 (HPAKL117_00170) comB7 35527..35640 (+) 114 WP_001217868.1 hypothetical protein Machinery gene
  HPAKL117_RS00200 (HPAKL117_00175) comB8 35637..36374 (+) 738 WP_015085302.1 type IV secretion system protein Machinery gene
  HPAKL117_RS00205 (HPAKL117_00180) comB9 36374..37342 (+) 969 WP_015085303.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPAKL117_RS00210 (HPAKL117_00185) comB10 37335..38471 (+) 1137 WP_015085304.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPAKL117_RS00215 (HPAKL117_00190) - 38538..39950 (+) 1413 WP_015085305.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPAKL117_RS00220 (HPAKL117_00195) gmd 39964..41109 (+) 1146 WP_015085306.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28528.77 Da        Isoelectric Point: 9.2251

>NTDB_id=54561 HPAKL117_RS00200 WP_015085302.1 35637..36374(+) (comB8) [Helicobacter pylori Aklavik117]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTKNSIY
AQSHLEREVYIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=54561 HPAKL117_RS00200 WP_015085302.1 35637..36374(+) (comB8) [Helicobacter pylori Aklavik117]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGAAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGAAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTTTATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTAGTTTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGTTTTAAAATCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.963

Multiple sequence alignment