Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   J1G47_RS07565 Genome accession   NZ_CP071487
Coordinates   1502038..1502379 (-) Length   113 a.a.
NCBI ID   WP_010786294.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497038..1507379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS07545 (J1G47_07545) prfB 1497983..1499081 (+) 1099 WP_106405085.1 peptide chain release factor 2 -
  J1G47_RS07550 (J1G47_07550) cmoB 1499171..1500133 (-) 963 WP_160416133.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  J1G47_RS07555 (J1G47_07555) - 1500256..1501353 (-) 1098 WP_012621948.1 ISAs1 family transposase -
  J1G47_RS07560 (J1G47_07560) - 1501490..1501938 (+) 449 Protein_1472 IS5 family transposase -
  J1G47_RS07565 (J1G47_07565) comEA/comE1 1502038..1502379 (-) 342 WP_010786294.1 helix-hairpin-helix domain-containing protein Machinery gene
  J1G47_RS07570 (J1G47_07570) - 1502637..1503902 (+) 1266 WP_075621034.1 LysM-like peptidoglycan-binding domain-containing protein -
  J1G47_RS07575 (J1G47_07575) - 1504004..1504360 (+) 357 WP_232422199.1 MliC family protein -
  J1G47_RS07580 (J1G47_07580) waaF 1504369..1505421 (+) 1053 WP_207326553.1 lipopolysaccharide heptosyltransferase II -
  J1G47_RS07585 (J1G47_07585) - 1505517..1506104 (+) 588 WP_021111029.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12407.27 Da        Isoelectric Point: 9.8972

>NTDB_id=545583 J1G47_RS07565 WP_010786294.1 1502038..1502379(-) (comEA/comE1) [Glaesserella parasuis strain YHP1818]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=545583 J1G47_RS07565 WP_010786294.1 1502038..1502379(-) (comEA/comE1) [Glaesserella parasuis strain YHP1818]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

98.23

100

0.982
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602