Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J1137_RS13925 Genome accession   NZ_CP071436
Coordinates   2852781..2853410 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli strain EcPNK006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2847781..2858410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1137_RS13910 (J1137_13910) helD 2848023..2850077 (-) 2055 WP_134778713.1 DNA helicase IV -
  J1137_RS13915 (J1137_13915) yccF 2850200..2850646 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J1137_RS13920 (J1137_13920) yccS 2850656..2852818 (+) 2163 WP_023281787.1 YccS family putative transporter -
  J1137_RS13925 (J1137_13925) sxy/tfoX 2852781..2853410 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J1137_RS13930 (J1137_13930) sulA 2853629..2854138 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J1137_RS13935 (J1137_13935) ompA 2854495..2855535 (+) 1041 WP_000750416.1 porin OmpA -
  J1137_RS13940 (J1137_13940) matP 2855611..2856063 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  J1137_RS13945 (J1137_13945) ycbZ 2856249..2858009 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=545290 J1137_RS13925 WP_000839152.1 2852781..2853410(-) (sxy/tfoX) [Escherichia coli strain EcPNK006]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=545290 J1137_RS13925 WP_000839152.1 2852781..2853410(-) (sxy/tfoX) [Escherichia coli strain EcPNK006]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995