Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J0W33_RS06160 Genome accession   NZ_CP071319
Coordinates   1290033..1290668 (+) Length   211 a.a.
NCBI ID   WP_160232300.1    Uniprot ID   -
Organism   Acinetobacter indicus strain GXNN62X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1285033..1295668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS06150 (J0W33_06150) - 1287152..1287967 (-) 816 WP_206896984.1 NAD(P)H-binding protein -
  J0W33_RS06155 (J0W33_06155) recG 1288001..1290046 (+) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  J0W33_RS06160 (J0W33_06160) comF 1290033..1290668 (+) 636 WP_160232300.1 ComF family protein Machinery gene
  J0W33_RS06165 (J0W33_06165) - 1290691..1291092 (-) 402 WP_168399737.1 NUDIX hydrolase -
  J0W33_RS06170 (J0W33_06170) - 1291095..1291688 (-) 594 WP_206896985.1 TIGR00730 family Rossman fold protein -
  J0W33_RS06175 (J0W33_06175) - 1291841..1292854 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  J0W33_RS06180 (J0W33_06180) - 1292994..1293281 (-) 288 WP_168414314.1 STAS domain-containing protein -
  J0W33_RS06185 (J0W33_06185) - 1293293..1293925 (-) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  J0W33_RS06190 (J0W33_06190) - 1293944..1294615 (-) 672 WP_005180325.1 outer membrane lipid asymmetry maintenance protein MlaD -
  J0W33_RS06195 (J0W33_06195) mlaE 1294615..1295394 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24394.40 Da        Isoelectric Point: 9.2130

>NTDB_id=544945 J0W33_RS06160 WP_160232300.1 1290033..1290668(+) (comF) [Acinetobacter indicus strain GXNN62X4]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=544945 J0W33_RS06160 WP_160232300.1 1290033..1290668(+) (comF) [Acinetobacter indicus strain GXNN62X4]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55