Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J0W32_RS09355 Genome accession   NZ_CP071317
Coordinates   1983861..1984187 (+) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain GXNN15X4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1978861..1989187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS09330 (J0W32_09330) hemC 1979540..1980457 (+) 918 WP_034598116.1 hydroxymethylbilane synthase -
  J0W32_RS09335 (J0W32_09335) - 1980459..1981238 (+) 780 WP_075167812.1 uroporphyrinogen-III synthase -
  J0W32_RS09340 (J0W32_09340) - 1981235..1982080 (+) 846 WP_168370317.1 hypothetical protein -
  J0W32_RS09345 (J0W32_09345) - 1982083..1983276 (+) 1194 WP_168370318.1 heme biosynthesis protein HemY -
  J0W32_RS09350 (J0W32_09350) - 1983287..1983715 (+) 429 WP_005181644.1 acyl-CoA thioesterase -
  J0W32_RS09355 (J0W32_09355) hns 1983861..1984187 (+) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  J0W32_RS09360 (J0W32_09360) gspN 1984351..1985091 (+) 741 WP_104473370.1 type II secretion system protein N -
  J0W32_RS09365 (J0W32_09365) - 1985091..1985927 (+) 837 WP_180006910.1 type II secretion system protein N -
  J0W32_RS09370 (J0W32_09370) gspD 1985968..1988217 (+) 2250 WP_180006909.1 type II secretion system secretin GspD -
  J0W32_RS09375 (J0W32_09375) - 1988284..1988991 (+) 708 WP_075167805.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=544920 J0W32_RS09355 WP_005181647.1 1983861..1984187(+) (hns) [Acinetobacter indicus strain GXNN15X4]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=544920 J0W32_RS09355 WP_005181647.1 1983861..1984187(+) (hns) [Acinetobacter indicus strain GXNN15X4]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852