Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   J0W32_RS09205 Genome accession   NZ_CP071317
Coordinates   1952260..1953828 (-) Length   522 a.a.
NCBI ID   WP_180006911.1    Uniprot ID   -
Organism   Acinetobacter indicus strain GXNN15X4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1947260..1958828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS09190 (J0W32_09190) gpmI 1948076..1949623 (+) 1548 WP_005181570.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  J0W32_RS09195 (J0W32_09195) - 1949647..1950816 (+) 1170 WP_005181572.1 S41 family peptidase -
  J0W32_RS09200 (J0W32_09200) pilR 1950833..1952188 (-) 1356 WP_171526345.1 sigma-54-dependent transcriptional regulator Regulator
  J0W32_RS09205 (J0W32_09205) pilS 1952260..1953828 (-) 1569 WP_180006911.1 sensor histidine kinase Regulator
  J0W32_RS09210 (J0W32_09210) - 1953843..1954478 (-) 636 WP_005181577.1 response regulator -
  J0W32_RS09215 (J0W32_09215) - 1954696..1955778 (+) 1083 WP_127799456.1 serine hydrolase -
  J0W32_RS09220 (J0W32_09220) thrC 1955871..1957016 (-) 1146 WP_005181581.1 threonine synthase -
  J0W32_RS09225 (J0W32_09225) - 1957074..1958378 (-) 1305 WP_016659702.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 60034.72 Da        Isoelectric Point: 7.0194

>NTDB_id=544918 J0W32_RS09205 WP_180006911.1 1952260..1953828(-) (pilS) [Acinetobacter indicus strain GXNN15X4]
MDIRRTQAELNQYHLGLWYGAYRLIIAFCLLLIYLLTTQTLNHDYQHPRLYAASLVLYFIFSCAQLLYFRYVRHRIPLQL
TLIFSVDVLVLSSLTFALDGPSLHLSLLFVIAIFAATLLLEKSKALFITLVAMICVTYQHFVGTLLDFSSLDRIGQSALL
SFLFFIIYRFGQIAVRRFQILEHLNFSQSLELNRLKNINRYILEQTDMGYLVLDENCHIMVSNPAACHLLGINPLYAFDK
YPLYKVQPDLFQLLQFDQLSNGEKFQFESQLSHFLIQIQVQKLVVPQQTLTLLVLQDARQINQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANRLLAGSDPDQQQMLSQMIDKQSQRIDKIIDDTLSMVKNKETTPVQIDLVRFIPQLIQDDLADLAS
QIQVSQPEPLQILFDESQLRQVLINLIRNAQRHNAPDHPIELQLYRQQDTIYMDVKDYGSGVASHDIRYLFQPFFSTEIS
GTGLGLYLSHSFCEANRAKLRYVEQKQGACFRIECSPVDVNK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=544918 J0W32_RS09205 WP_180006911.1 1952260..1953828(-) (pilS) [Acinetobacter indicus strain GXNN15X4]
ATGGATATCCGCCGTACGCAAGCTGAACTGAACCAGTACCATCTCGGGCTATGGTACGGGGCGTATCGGCTGATAATTGC
CTTCTGTTTGCTGCTGATTTATTTACTCACCACTCAAACTCTCAATCATGATTATCAGCATCCACGGCTGTATGCCGCCA
GTCTGGTGCTGTATTTTATTTTTAGCTGTGCCCAGCTGCTGTATTTTCGCTATGTCCGGCACAGGATTCCGCTACAACTC
ACGCTGATTTTCAGTGTTGATGTACTGGTGCTCAGCAGCCTGACCTTTGCGCTGGATGGACCGAGCCTGCATTTAAGCCT
GCTGTTTGTGATTGCGATTTTCGCCGCGACGTTATTGCTGGAAAAAAGCAAGGCGCTGTTCATTACTCTGGTGGCAATGA
TTTGTGTCACCTATCAGCATTTTGTTGGCACATTACTGGATTTTTCCTCTCTGGATCGCATCGGGCAAAGTGCCCTGCTC
TCGTTCCTGTTTTTTATTATTTACCGTTTTGGCCAGATTGCCGTCCGCCGTTTCCAGATTCTGGAGCACCTGAACTTTTC
CCAATCACTGGAACTGAACCGGCTAAAGAATATTAACCGCTATATTCTGGAACAGACCGATATGGGCTATCTGGTGCTGG
ATGAAAACTGCCATATTATGGTCAGTAATCCGGCCGCCTGCCATTTGCTGGGTATTAATCCGCTGTATGCTTTCGACAAA
TATCCACTGTATAAAGTACAGCCCGACCTGTTTCAATTATTGCAGTTTGACCAGCTCTCTAACGGCGAAAAATTCCAGTT
TGAATCGCAGCTCAGTCATTTCCTGATCCAGATTCAGGTACAAAAGCTGGTGGTGCCGCAGCAGACCTTAACCTTGCTGG
TGCTGCAGGATGCACGGCAAATCAACCAGCGTGTGCAGCAACTGAAACTGGCAGCACTGGGCCAGCTTTCAGCCAGTATT
GCCCATGAAATCCGTAATCCGCTGGCGGCCATTGTCCAGGCCAATCGCTTGCTGGCCGGCAGCGATCCCGATCAGCAGCA
GATGCTGAGCCAGATGATCGACAAGCAGTCGCAGCGCATTGACAAGATCATTGATGACACCCTGAGCATGGTGAAAAATA
AGGAAACCACACCGGTGCAGATTGATCTGGTGCGTTTTATTCCGCAGCTGATCCAGGATGATCTGGCCGATCTGGCCAGC
CAGATTCAGGTCAGCCAGCCCGAACCTCTGCAAATTCTGTTTGATGAATCCCAGCTGCGTCAGGTGCTGATTAACCTGAT
CCGTAATGCCCAGCGCCACAATGCGCCGGATCATCCGATTGAACTGCAACTTTATCGCCAGCAGGACACGATCTATATGG
ATGTCAAAGATTATGGCAGCGGCGTGGCTTCACATGATATTCGCTACCTGTTTCAACCATTTTTTAGTACCGAAATTAGT
GGAACTGGTTTAGGATTATACTTATCACATAGTTTCTGCGAGGCCAATCGGGCCAAGTTGCGCTATGTAGAACAAAAACA
AGGAGCATGTTTCAGGATTGAATGCTCACCTGTTGACGTAAATAAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.802

96.743

0.579