Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J0W32_RS06135 Genome accession   NZ_CP071317
Coordinates   1286314..1286949 (+) Length   211 a.a.
NCBI ID   WP_206862884.1    Uniprot ID   -
Organism   Acinetobacter indicus strain GXNN15X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1281314..1291949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS06125 (J0W32_06125) - 1283433..1284248 (-) 816 WP_206862883.1 NAD(P)H-binding protein -
  J0W32_RS06130 (J0W32_06130) recG 1284282..1286327 (+) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  J0W32_RS06135 (J0W32_06135) comF 1286314..1286949 (+) 636 WP_206862884.1 ComF family protein Machinery gene
  J0W32_RS06140 (J0W32_06140) - 1286972..1287373 (-) 402 WP_168399737.1 NUDIX hydrolase -
  J0W32_RS06145 (J0W32_06145) - 1287376..1287969 (-) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  J0W32_RS06150 (J0W32_06150) - 1288122..1289135 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  J0W32_RS06155 (J0W32_06155) - 1289275..1289562 (-) 288 WP_005180321.1 STAS domain-containing protein -
  J0W32_RS06160 (J0W32_06160) - 1289574..1290206 (-) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  J0W32_RS06165 (J0W32_06165) - 1290225..1290896 (-) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  J0W32_RS06170 (J0W32_06170) mlaE 1290896..1291675 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24394.40 Da        Isoelectric Point: 9.2130

>NTDB_id=544903 J0W32_RS06135 WP_206862884.1 1286314..1286949(+) (comF) [Acinetobacter indicus strain GXNN15X4]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETELQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=544903 J0W32_RS06135 WP_206862884.1 1286314..1286949(+) (comF) [Acinetobacter indicus strain GXNN15X4]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGCTTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTACTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55