Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   JZY07_RS09155 Genome accession   NZ_CP071305
Coordinates   1839671..1840360 (-) Length   229 a.a.
NCBI ID   WP_002942700.1    Uniprot ID   A0A126UNE5
Organism   Streptococcus suis strain SC183     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834671..1845360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS09130 (JZY07_09130) - 1835141..1835854 (-) 714 WP_024412187.1 nitroreductase family protein -
  JZY07_RS09135 (JZY07_09135) dnaI 1835851..1836750 (-) 900 WP_024412188.1 primosomal protein DnaI -
  JZY07_RS09140 (JZY07_09140) - 1836750..1837901 (-) 1152 WP_024412189.1 replication initiation/membrane attachment protein -
  JZY07_RS09145 (JZY07_09145) nrdR 1837888..1838379 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  JZY07_RS09150 (JZY07_09150) - 1838451..1839581 (-) 1131 WP_024412190.1 AI-2E family transporter -
  JZY07_RS09155 (JZY07_09155) covR 1839671..1840360 (-) 690 WP_002942700.1 winged helix-turn-helix domain-containing protein Regulator
  JZY07_RS09160 (JZY07_09160) gndA 1840442..1841869 (-) 1428 WP_024380514.1 NADP-dependent phosphogluconate dehydrogenase -
  JZY07_RS09165 (JZY07_09165) - 1841966..1842505 (-) 540 WP_014736258.1 DUF177 domain-containing protein -
  JZY07_RS09170 (JZY07_09170) trxB 1842515..1843432 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  JZY07_RS09175 (JZY07_09175) - 1843446..1843670 (-) 225 WP_002936682.1 DUF4059 family protein -
  JZY07_RS09180 (JZY07_09180) - 1843688..1845031 (-) 1344 WP_024412191.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26225.11 Da        Isoelectric Point: 5.3968

>NTDB_id=544873 JZY07_RS09155 WP_002942700.1 1839671..1840360(-) (covR) [Streptococcus suis strain SC183]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=544873 JZY07_RS09155 WP_002942700.1 1839671..1840360(-) (covR) [Streptococcus suis strain SC183]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGCGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGTCCAGAACCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UNE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432