Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JZY07_RS03185 Genome accession   NZ_CP071305
Coordinates   619653..620456 (+) Length   267 a.a.
NCBI ID   WP_044681030.1    Uniprot ID   A0A0Z8P090
Organism   Streptococcus suis strain SC183     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 614653..625456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS03160 (JZY07_03160) - 615082..615780 (-) 699 WP_014637677.1 amino acid ABC transporter permease -
  JZY07_RS03165 (JZY07_03165) - 615795..616634 (-) 840 WP_206974778.1 transporter substrate-binding domain-containing protein -
  JZY07_RS03170 (JZY07_03170) - 616645..617406 (-) 762 WP_029188263.1 amino acid ABC transporter ATP-binding protein -
  JZY07_RS03175 (JZY07_03175) micA 617600..618304 (+) 705 WP_004298854.1 response regulator YycF Regulator
  JZY07_RS03180 (JZY07_03180) micB 618297..619646 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JZY07_RS03185 (JZY07_03185) vicX 619653..620456 (+) 804 WP_044681030.1 MBL fold metallo-hydrolase Regulator
  JZY07_RS03190 (JZY07_03190) vga(F) 620813..622198 (+) 1386 WP_206974779.1 ABC-F type ribosomal protection protein Vga(F) -
  JZY07_RS03195 (JZY07_03195) pbp2b 622290..624362 (+) 2073 WP_024376693.1 penicillin-binding protein PBP2B -
  JZY07_RS03200 (JZY07_03200) recR 624371..624967 (+) 597 WP_024412159.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29615.68 Da        Isoelectric Point: 5.7755

>NTDB_id=544857 JZY07_RS03185 WP_044681030.1 619653..620456(+) (vicX) [Streptococcus suis strain SC183]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVILTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATALTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=544857 JZY07_RS03185 WP_044681030.1 619653..620456(+) (vicX) [Streptococcus suis strain SC183]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACTTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGTGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGACATTGAGTCCTTTGGAGTTAGTCACGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATATTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGCCATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCACTTGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTGCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8P090

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772