Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   J0J32_RS09160 Genome accession   NZ_CP071285
Coordinates   1870854..1871897 (-) Length   347 a.a.
NCBI ID   WP_003133153.1    Uniprot ID   A0AA46TVQ7
Organism   Lactococcus garvieae strain LG728     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1865854..1876897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J32_RS09145 (J0J32_09145) rpsB 1865890..1866663 (-) 774 WP_195212943.1 30S ribosomal protein S2 -
  J0J32_RS09150 (J0J32_09150) - 1866936..1867976 (+) 1041 WP_003133156.1 lactonase family protein -
  J0J32_RS09155 (J0J32_09155) adhE 1868131..1870824 (+) 2694 WP_207144471.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  J0J32_RS09160 (J0J32_09160) sepM 1870854..1871897 (-) 1044 WP_003133153.1 SepM family pheromone-processing serine protease Regulator
  J0J32_RS09165 (J0J32_09165) coaD 1871887..1872384 (-) 498 WP_207144472.1 pantetheine-phosphate adenylyltransferase -
  J0J32_RS09170 (J0J32_09170) rsmD 1872374..1872913 (-) 540 WP_003133150.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J0J32_RS09175 (J0J32_09175) - 1873008..1874354 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37816.10 Da        Isoelectric Point: 6.9825

>NTDB_id=544601 J0J32_RS09160 WP_003133153.1 1870854..1871897(-) (sepM) [Lactococcus garvieae strain LG728]
MKNEKIKKHKKLKLFFGIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDEVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=544601 J0J32_RS09160 WP_003133153.1 1870854..1871897(-) (sepM) [Lactococcus garvieae strain LG728]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGGTATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTGTTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAATCAGATGGTAGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTACGGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAAAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATTACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGGCACACTTTCAAATCTTCAACTGAGATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGGTGGATGGCAGCAACCATGAAGCCACAGGCAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GCATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCCGGAAGTATTGGCGGACCAAGT
GCTGGGATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.568

100

0.496