Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   J0J32_RS08985 Genome accession   NZ_CP071285
Coordinates   1831043..1832290 (-) Length   415 a.a.
NCBI ID   WP_003133508.1    Uniprot ID   -
Organism   Lactococcus garvieae strain LG728     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1826043..1837290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J32_RS10870 - 1827645..1828460 (-) 816 Protein_1756 PolC-type DNA polymerase III N-terminal domain-containing protein -
  J0J32_RS08980 (J0J32_08980) - 1829166..1831016 (-) 1851 WP_003133504.1 proline--tRNA ligase -
  J0J32_RS08985 (J0J32_08985) eeP 1831043..1832290 (-) 1248 WP_003133508.1 RIP metalloprotease RseP Regulator
  J0J32_RS08990 (J0J32_08990) - 1832466..1833260 (-) 795 WP_003133509.1 phosphatidate cytidylyltransferase -
  J0J32_RS08995 (J0J32_08995) - 1833257..1833994 (-) 738 WP_003133511.1 isoprenyl transferase -
  J0J32_RS09000 (J0J32_09000) yajC 1834195..1834530 (-) 336 WP_003133513.1 preprotein translocase subunit YajC -
  J0J32_RS09005 (J0J32_09005) - 1834605..1835252 (-) 648 WP_003133514.1 DNA alkylation repair protein -
  J0J32_RS09010 (J0J32_09010) rlmH 1835249..1835728 (-) 480 WP_003133515.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  J0J32_RS09015 (J0J32_09015) htrA 1836032..1837249 (+) 1218 WP_003133516.1 trypsin-like peptidase domain-containing protein Regulator

Sequence


Protein


Download         Length: 415 a.a.        Molecular weight: 45065.51 Da        Isoelectric Point: 5.8048

>NTDB_id=544599 J0J32_RS08985 WP_003133508.1 1831043..1832290(-) (eeP) [Lactococcus garvieae strain LG728]
MIQTLVTFIIVFGIIVVVHEYGHLFFAKRAGILVREFSIGMGPKIFAHQAKDGTFYSIRILPLGGYVRMAGWGDDTTEIK
KGTPASLVIVENQVVKINLSERVTLENSVPMLVTEYDFEEALFIEGEVFGEIKRYSVDHDATIIEADGTELRIAPRDVQY
QSASVLGKILTNFAGPLNNFILGIIAFIIITFMQGGVPSNTNQIGQVQSGTPAYSAGLQPKDKIQAVNGEKTGNWQEVVQ
RISANDGSEIKLDIERDGASKTLELKPEKIDGRYRIGITQTIKTGFLDKLTGGFTQAANAATLIFKALGNLIAQPSLDKL
GGPVAIYDLSGQAAREGLLSIIALLAMLSINLGIVNLIPIPVLDGGKIVLNIVEALRGKPLSQEKEGILTLVGLVFMVVL
MIAVTWNDILRAFIR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=544599 J0J32_RS08985 WP_003133508.1 1831043..1832290(-) (eeP) [Lactococcus garvieae strain LG728]
TTGATTCAAACATTGGTAACATTTATCATTGTCTTTGGTATTATTGTTGTTGTACATGAATATGGTCATCTGTTCTTTGC
CAAACGCGCGGGGATTTTAGTTCGCGAGTTTTCCATTGGAATGGGGCCCAAAATTTTTGCACATCAAGCCAAAGATGGCA
CATTTTATAGCATTCGTATACTTCCTCTTGGAGGTTATGTACGCATGGCGGGCTGGGGCGATGATACAACGGAAATAAAA
AAAGGGACCCCGGCATCTTTGGTGATTGTTGAAAATCAGGTGGTTAAAATTAATCTTTCTGAACGGGTAACTTTGGAAAA
CAGTGTCCCCATGCTGGTCACTGAATACGATTTTGAAGAAGCTCTTTTCATTGAAGGAGAAGTTTTTGGTGAAATAAAAC
GTTATTCAGTTGACCATGACGCAACAATTATTGAAGCTGATGGAACGGAACTTCGTATCGCTCCACGAGATGTACAATAT
CAAAGTGCTAGCGTTCTCGGCAAGATTTTAACAAATTTTGCTGGCCCTTTAAATAACTTTATTTTAGGGATTATAGCTTT
TATCATCATCACTTTTATGCAAGGTGGTGTACCTTCTAATACAAATCAAATCGGACAAGTGCAATCGGGTACCCCTGCTT
ATTCGGCAGGTTTACAGCCAAAAGATAAAATCCAAGCAGTCAATGGCGAAAAAACGGGCAACTGGCAAGAAGTTGTCCAA
CGGATTAGTGCAAATGACGGCAGTGAAATCAAGCTGGATATTGAACGGGATGGCGCATCAAAGACACTAGAGCTCAAACC
AGAAAAAATTGACGGAAGATATCGCATTGGTATCACTCAGACAATTAAAACGGGCTTTTTAGATAAACTAACGGGTGGCT
TTACCCAAGCTGCTAACGCAGCCACACTGATATTTAAAGCTTTAGGCAATCTTATAGCACAGCCAAGCCTTGATAAACTT
GGTGGACCTGTCGCTATTTATGATTTAAGTGGACAAGCAGCCCGAGAAGGACTATTATCCATCATCGCTTTACTTGCCAT
GCTCTCAATCAATCTGGGAATCGTCAATTTAATCCCAATTCCCGTCCTTGACGGAGGGAAAATCGTCCTCAATATTGTTG
AGGCCTTACGAGGCAAACCACTTTCACAAGAAAAAGAAGGAATTTTAACACTTGTGGGTCTTGTCTTTATGGTGGTTCTG
ATGATTGCTGTGACTTGGAATGATATTCTCCGAGCCTTTATTAGATAA

Domains


Predicted by InterproScan.

(7-400)

(204-256)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

56.325

100

0.569

  eeP Streptococcus thermophilus LMD-9

56.086

100

0.566