Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JWY36_RS12660 Genome accession   NZ_CP071276
Coordinates   2357184..2357519 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain JNFE0126     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2352184..2362519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWY36_RS12640 (JWY36_12530) gcvT 2352776..2353864 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  JWY36_RS12645 (JWY36_12535) hepAA 2354306..2355979 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  JWY36_RS12650 (JWY36_12540) yqhG 2356000..2356794 (+) 795 WP_014480249.1 YqhG family protein -
  JWY36_RS12655 (JWY36_12545) sinI 2356977..2357150 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  JWY36_RS12660 (JWY36_12550) sinR 2357184..2357519 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  JWY36_RS12665 (JWY36_12555) tasA 2357612..2358397 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  JWY36_RS12670 (JWY36_12560) sipW 2358461..2359033 (-) 573 WP_003230181.1 signal peptidase I SipW -
  JWY36_RS12675 (JWY36_12565) tapA 2359017..2359778 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  JWY36_RS12680 (JWY36_12570) yqzG 2360050..2360376 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  JWY36_RS12685 (JWY36_12575) spoIITA 2360418..2360597 (-) 180 WP_014480252.1 YqzE family protein -
  JWY36_RS12690 (JWY36_12580) comGG 2360668..2361042 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  JWY36_RS12695 (JWY36_12585) comGF 2361043..2361426 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  JWY36_RS12700 (JWY36_12590) comGE 2361452..2361799 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  JWY36_RS12705 (JWY36_12595) comGD 2361783..2362214 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  JWY36_RS12710 (JWY36_12600) comGC 2362204..2362500 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=544498 JWY36_RS12660 WP_003226345.1 2357184..2357519(+) (sinR) [Bacillus subtilis strain JNFE0126]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=544498 JWY36_RS12660 WP_003226345.1 2357184..2357519(+) (sinR) [Bacillus subtilis strain JNFE0126]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1