Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LO742_RS17590 Genome accession   NZ_CP087287
Coordinates   3547514..3548251 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain APEC 16-1068     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3542514..3553251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO742_RS17575 (LO742_17555) clpC 3542968..3545541 (-) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator
  LO742_RS17580 (LO742_17560) yfiH 3545671..3546402 (-) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  LO742_RS17585 (LO742_17565) rluD 3546399..3547379 (-) 981 WP_000079096.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LO742_RS17590 (LO742_17570) comL 3547514..3548251 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LO742_RS17595 (LO742_17575) raiA 3548521..3548862 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LO742_RS17600 (LO742_17580) pheL 3548966..3549013 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LO742_RS17605 (LO742_17585) pheA 3549112..3550272 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  LO742_RS17610 (LO742_17590) tyrA 3550315..3551436 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LO742_RS17615 (LO742_17595) aroF 3551447..3552517 (-) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LO742_RS17620 (LO742_17600) yfiL 3552727..3553092 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=544396 LO742_RS17590 WP_000197686.1 3547514..3548251(+) (comL) [Escherichia coli strain APEC 16-1068]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=544396 LO742_RS17590 WP_000197686.1 3547514..3548251(+) (comL) [Escherichia coli strain APEC 16-1068]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376