Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0J80_RS02625 Genome accession   NZ_CP071251
Coordinates   504416..504982 (-) Length   188 a.a.
NCBI ID   WP_055243504.1    Uniprot ID   A0A9Q9CPW9
Organism   Turicibacter bilis strain PIG517     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 499416..509982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J80_RS02610 (J0J80_02620) - 500208..501125 (-) 918 WP_212723696.1 DUF2232 domain-containing protein -
  J0J80_RS02615 (J0J80_02625) - 503255..503422 (+) 168 WP_172676274.1 hypothetical protein -
  J0J80_RS02620 (J0J80_02630) rpsR 504130..504363 (-) 234 WP_006784586.1 30S ribosomal protein S18 -
  J0J80_RS02625 (J0J80_02635) ssb 504416..504982 (-) 567 WP_055243504.1 single-stranded DNA-binding protein Machinery gene
  J0J80_RS02630 (J0J80_02640) rpsF 505014..505301 (-) 288 WP_055243505.1 30S ribosomal protein S6 -
  J0J80_RS02635 (J0J80_02645) ychF 505605..506705 (-) 1101 WP_055243506.1 redox-regulated ATPase YchF -
  J0J80_RS02640 (J0J80_02650) - 506849..507241 (+) 393 WP_055243507.1 NUDIX domain-containing protein -
  J0J80_RS02645 (J0J80_02655) - 507287..508051 (-) 765 WP_244969055.1 A24 family peptidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20175.09 Da        Isoelectric Point: 4.5673

>NTDB_id=544328 J0J80_RS02625 WP_055243504.1 504416..504982(-) (ssb) [Turicibacter bilis strain PIG517]
MINRVVLVGRLTRDPELKYTTNGIANLRFSIAVNRTFTSQNGERQADFINCVAWRGQAENMAKFLRKGSLIGVEGRIETG
SYQAQDGSMRYTTDVVCDSVQFLEPRSASADRGNFGAQPSQDFGGGFGGGYGGTPSFQQQAPASNGFGGNPFGGAPSMDQ
GFGNPSQSFNNEPDFSSTINISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=544328 J0J80_RS02625 WP_055243504.1 504416..504982(-) (ssb) [Turicibacter bilis strain PIG517]
ATGATTAATCGCGTTGTTTTAGTAGGGCGATTAACTCGTGATCCAGAACTAAAGTATACAACTAATGGGATCGCAAACTT
GCGATTCAGTATTGCGGTTAATCGCACTTTCACTAGTCAAAATGGAGAACGCCAAGCAGATTTCATTAACTGTGTTGCAT
GGCGCGGCCAAGCTGAGAATATGGCGAAGTTTTTACGTAAAGGATCTCTTATTGGAGTGGAAGGACGTATTGAAACAGGT
AGCTATCAGGCTCAGGATGGATCAATGCGTTATACAACAGATGTGGTGTGCGATAGCGTACAGTTCTTAGAACCACGCTC
TGCATCTGCTGATCGAGGAAACTTTGGAGCTCAACCATCACAAGACTTTGGTGGAGGCTTTGGAGGTGGATACGGTGGTA
CGCCATCATTCCAACAACAAGCGCCAGCATCAAATGGCTTTGGTGGAAATCCTTTCGGAGGAGCACCAAGTATGGATCAA
GGCTTCGGAAATCCATCGCAATCATTTAATAATGAGCCAGATTTCAGCTCAACTATTAATATTTCTGATGATGATTTACC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

47.917

100

0.489
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.421

100

0.489