Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LMF34_RS15855 Genome accession   NZ_CP086678
Coordinates   3308217..3308954 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain EFF60     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3303217..3313954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMF34_RS15825 yfiL 3303375..3303740 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  LMF34_RS15830 aroF 3303950..3305020 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LMF34_RS15835 tyrA 3305031..3306152 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LMF34_RS15840 pheA 3306195..3307355 (-) 1161 WP_000200137.1 bifunctional chorismate mutase/prephenate dehydratase -
  LMF34_RS15845 pheL 3307454..3307501 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LMF34_RS15850 raiA 3307605..3307946 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LMF34_RS15855 comL 3308217..3308954 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  LMF34_RS15860 rluD 3309089..3310069 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LMF34_RS15865 yfiH 3310066..3310797 (+) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  LMF34_RS15870 clpC 3310927..3313500 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=544052 LMF34_RS15855 WP_000197689.1 3308217..3308954(-) (comL) [Escherichia coli strain EFF60]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=544052 LMF34_RS15855 WP_000197689.1 3308217..3308954(-) (comL) [Escherichia coli strain EFF60]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376