Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   THEOS_RS10915 Genome accession   NC_019386
Coordinates   2066259..2068280 (+) Length   673 a.a.
NCBI ID   WP_016330366.1    Uniprot ID   K7R1J1
Organism   Thermus oshimai JL-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2061259..2073280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THEOS_RS10875 (Theos_2194) - 2061422..2061880 (+) 459 WP_016330358.1 hypothetical protein -
  THEOS_RS10880 (Theos_2195) pfkA 2061877..2062845 (-) 969 WP_016330359.1 6-phosphofructokinase -
  THEOS_RS10885 (Theos_2196) rsmI 2062842..2063630 (-) 789 WP_016330360.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  THEOS_RS10890 (Theos_2197) - 2063632..2064123 (-) 492 WP_016330361.1 hypothetical protein -
  THEOS_RS10895 (Theos_2198) - 2064165..2064692 (-) 528 WP_016330362.1 inorganic diphosphatase -
  THEOS_RS10900 (Theos_2199) - 2064703..2065335 (-) 633 WP_016330363.1 glycerophosphodiester phosphodiesterase -
  THEOS_RS10905 (Theos_2200) - 2065358..2065981 (+) 624 WP_016330364.1 hypothetical protein -
  THEOS_RS10910 (Theos_2201) comEA 2065954..2066262 (+) 309 WP_016330365.1 ComEA family DNA-binding protein Machinery gene
  THEOS_RS10915 (Theos_2202) comA/comEC 2066259..2068280 (+) 2022 WP_016330366.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  THEOS_RS10920 (Theos_2203) - 2068268..2069071 (-) 804 WP_016330367.1 ParB/RepB/Spo0J family partition protein -
  THEOS_RS10925 (Theos_2204) soj 2069055..2069804 (-) 750 WP_016330368.1 chromosome-partitioning ATPase Soj -
  THEOS_RS10930 (Theos_2205) rsmG 2069798..2070526 (-) 729 WP_016330369.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  THEOS_RS10935 (Theos_2206) mnmG 2070564..2072354 (-) 1791 WP_016330370.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 71162.41 Da        Isoelectric Point: 9.8747

>NTDB_id=54371 THEOS_RS10915 WP_016330366.1 2066259..2068280(+) (comA/comEC) [Thermus oshimai JL-2]
MRSVGIGLGLGGLLGALALLHPLWALGLLGLPLLRLPFLLGFLLVLGRGVLLPLPEPPYGVRVEGVFRVEGGFTAWEGHR
LWVAHYPPLEDGLYRLRGYVAPPEGRTNPGGLDQRAWLLSQGSKGVLKAEEAERVGGMGGLGEAFRKRLAQGLSPEAKEV
LEGLVLGEKRGLEELYPLFQKAGLAHLLALSGLHVGLLLGAFLLLYPLGRARFLLALLALGFYLLLAGPSPSLVRASLMG
GLSLLGLLLGLGRAGVLQGLGVALFLQLLLRPEAVLGLGFQLSHLAVLGMALVLPALRPPPGPWGWVLGGLAATLAAQSL
LLPLLLHHFHLLPLLSPLTNLLALPLAALLVPLGFLKLFLGAPLAPLAEPLAQGLLALAEGGSRGPLLRMGETAPLGFAF
YYLALLPPLLALHGRLPWGKALLLSSFPTLLGLLQAWPKPLDLWALDVGQGDAFLARLGGAEVLVDGGRPEMGERVVRAL
RALGVEALEVLVATHPDADHAGGLLKVVEEVPVGLALLSPAFGEEDPLARALKAKGIPTLRPGAGTRLRVGRGTVEVLWP
ETLSGEENRDGLALLLGFGKGRALLLADLPQEAEEALEAPPVEVLKVSHHGSRTGTSLRLLQQARPKVALIGVGKNPHGH
PHPEVLERLKSHGVRVYRTDRDGAVRVLFGYAW

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=54371 THEOS_RS10915 WP_016330366.1 2066259..2068280(+) (comA/comEC) [Thermus oshimai JL-2]
ATGAGGTCCGTCGGCATCGGCCTTGGCCTGGGGGGGCTTTTAGGAGCCCTCGCCCTCCTCCACCCCCTCTGGGCCCTGGG
CCTTCTTGGCCTTCCCCTCCTCCGCCTTCCCTTCCTCCTGGGCTTCCTCCTCGTCCTGGGGCGCGGGGTCCTCCTCCCCC
TCCCCGAGCCCCCCTACGGGGTGCGGGTGGAGGGGGTCTTCCGGGTGGAAGGGGGGTTTACGGCGTGGGAAGGCCACCGC
CTTTGGGTGGCCCACTACCCTCCTTTGGAGGACGGGCTCTACCGGCTACGGGGGTACGTTGCCCCTCCCGAGGGCCGGAC
CAACCCCGGGGGGCTGGACCAGAGGGCCTGGCTCCTTTCCCAGGGGTCCAAAGGGGTCCTGAAGGCGGAAGAGGCGGAAA
GGGTAGGGGGAATGGGAGGCCTTGGGGAGGCCTTCCGAAAGCGGCTCGCCCAGGGGCTTTCCCCCGAGGCCAAGGAGGTC
CTGGAGGGGCTCGTCCTGGGGGAGAAACGGGGCCTGGAGGAGCTCTACCCTCTCTTCCAGAAGGCGGGGCTTGCCCACCT
CCTGGCCCTTTCCGGGCTCCATGTGGGCCTCCTCCTCGGGGCCTTCCTCCTCCTCTACCCCTTGGGAAGGGCGCGCTTCC
TCCTCGCCCTTCTGGCCCTGGGCTTTTACCTGCTCCTGGCCGGGCCGAGCCCCTCTTTGGTGCGGGCGAGCCTCATGGGG
GGGCTTTCCCTCCTGGGGCTTCTCCTGGGCCTGGGGCGGGCGGGGGTGCTCCAGGGGCTGGGGGTGGCCCTCTTCCTCCA
GCTCCTCCTCCGGCCGGAGGCGGTCTTGGGCCTCGGCTTCCAGCTCTCCCATTTGGCCGTCCTCGGCATGGCCCTGGTCC
TCCCCGCCCTGAGGCCGCCTCCGGGGCCCTGGGGGTGGGTCCTGGGGGGCCTCGCCGCCACCCTGGCGGCCCAAAGCCTC
CTCCTCCCCCTCCTCCTCCACCATTTCCACCTCCTGCCCCTCCTAAGCCCCCTCACCAACCTCCTGGCCCTGCCCCTGGC
CGCCCTTCTGGTGCCCCTGGGGTTCCTGAAGCTCTTCCTCGGGGCCCCCCTCGCCCCCCTGGCGGAGCCCCTGGCCCAAG
GGCTCCTGGCCCTGGCCGAGGGGGGAAGCCGGGGCCCCCTTCTCCGCATGGGGGAGACCGCCCCTCTGGGCTTCGCCTTC
TACTACCTAGCCCTCCTCCCCCCTCTCCTCGCCCTCCACGGCCGCCTTCCCTGGGGGAAGGCCCTCCTCCTATCCTCTTT
TCCCACCCTCCTGGGCCTCCTCCAGGCCTGGCCCAAGCCCCTGGACCTCTGGGCCCTGGACGTGGGCCAGGGGGACGCCT
TCCTGGCCCGGCTGGGCGGGGCCGAGGTCCTGGTGGACGGGGGACGGCCCGAGATGGGGGAGAGGGTGGTGCGGGCCCTT
AGGGCTCTCGGGGTGGAGGCCCTGGAGGTCCTGGTGGCCACCCACCCCGACGCCGACCATGCGGGCGGGCTCCTTAAGGT
GGTGGAGGAGGTCCCGGTGGGCCTCGCCCTCCTCTCCCCCGCTTTTGGGGAGGAAGATCCCCTGGCGAGGGCCCTAAAGG
CGAAGGGGATCCCCACCCTGCGGCCAGGGGCGGGGACGCGCCTCCGGGTGGGAAGGGGCACGGTAGAGGTCCTCTGGCCG
GAGACCTTAAGCGGGGAGGAGAATCGGGACGGCCTGGCCCTCCTCCTGGGCTTCGGCAAGGGTAGGGCCCTCCTCCTCGC
CGACCTGCCCCAGGAGGCCGAAGAGGCCCTGGAGGCCCCCCCGGTGGAGGTCCTCAAGGTGAGCCATCACGGTTCCCGCA
CGGGCACGAGCCTACGGCTTTTGCAGCAGGCCCGGCCCAAGGTAGCCCTCATCGGGGTGGGGAAAAACCCCCACGGCCAC
CCCCACCCTGAGGTGCTGGAGCGGCTAAAGTCCCATGGGGTGCGGGTCTACCGCACGGACCGGGACGGGGCGGTGCGGGT
CCTCTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(447-631)

Competence protein (Competence)

(164-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7R1J1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

72.768

99.851

0.727

Multiple sequence alignment