Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SCAZ3_RS08845 Genome accession   NZ_AIDX01000001
Coordinates   1817963..1821595 (+) Length   1210 a.a.
NCBI ID   WP_003047936.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1812963..1826595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS08835 - 1813662..1814566 (-) 905 Protein_1726 neutral zinc metallopeptidase -
  SCAZ3_RS08840 (SCAZ3_04465) rexB 1814742..1817966 (+) 3225 WP_003047933.1 ATP-dependent nuclease subunit B Machinery gene
  SCAZ3_RS08845 (SCAZ3_04470) rexA 1817963..1821595 (+) 3633 WP_003047936.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SCAZ3_RS08850 (SCAZ3_04475) - 1821734..1822849 (+) 1116 WP_003047939.1 aminotransferase -
  SCAZ3_RS08855 (SCAZ3_04480) - 1822917..1823729 (+) 813 WP_003047942.1 transporter substrate-binding domain-containing protein -
  SCAZ3_RS08860 (SCAZ3_04485) - 1823862..1824050 (+) 189 WP_001161739.1 hypothetical protein -
  SCAZ3_RS08865 (SCAZ3_04490) - 1824087..1824581 (+) 495 WP_000620669.1 hypothetical protein -
  SCAZ3_RS08870 (SCAZ3_04495) - 1824592..1824921 (+) 330 WP_000806219.1 hypothetical protein -
  SCAZ3_RS08875 (SCAZ3_04510) - 1825137..1825364 (+) 228 WP_000368981.1 hypothetical protein -

Sequence

Protein


Download         Length: 1210 a.a.        Molecular weight: 138163.41 Da        Isoelectric Point: 5.2258

>NTDB_id=54370 SCAZ3_RS08845 WP_003047936.1 1817963..1821595(+) (rexA) [Streptococcus canis FSL Z3-227]
MITFEPFLSPEAIAQLQETESRSQAAQKRTPQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGVAIDRLFISTF
TVKAATELRDRIEKKLYAQIAQTTDYQLKAYLTEQLQTLSQADIGTMDAFAQKLVNHYGYSIGLSPRFRIMQDKAEQDVL
KQDVFSKLFETFMAQSDSSLFKALVKNFSGNRKDASAFRDLIYSCYSFSQSTENPREWLQETFLKAAKTYQRLEDIPLQD
IELLLASMHDTADQLRDLTDMEEYGQLTKAGKPTVKYINHLKVIENLHHWARDFDHLYGRQGIGQLAKDLTTMLPSGNDV
TVAGTKYPIFKALHQKLTRFRHLETILAYQGESLPLLEVLQRFVVAFSDAYLAAKMQEAAFEFTDIAHFAIQILEENPDI
RQAYQQQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDMKQSIYRFRQADPQIFNQKFKDYQAHPEQGKLILLKENF
RSQSEVLDASNAVFSHLMDESLGDILYDEQHQLVAGSDAQKVSYPEHRAKLLLYNTDRNDEVEEEDSDGLSPNEVNIVAK
EIIRLHNDQGVPFEDITLLVSTRTRNDAIFHAFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRS
PMFAFDEDELARLALQKGSDQDTTCLYDKLEKALLGTGAHSDLVHDELMAKLSGFMETLKNWRRYAKIKSLHDLIWKIFN
DRFYFDLVASQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETKNDLADVEVTSPKQAVNLMTIHKSKGLE
FQYVFILNCDKRFAMTDIHAPFILNRQQGIGIKYLADVKELLGEETLASVKVSMETLPYQLNQQELRLATLSEQMRLLYV
AMTRAEKQLFLVGKASKQKSQELTDGKYTGKLLPLALREQLMTFQDWLLAITDTFTTEDLCFDVCFIEDSDLSPEVIGQL
QNPQVLHPDNLKDNRQSADIVRALDMLDKVSQLNAGYEAAINLPTVRTPSQLKASYEPLLDSEGVEVMEKTYHTSTAFTL
PDFSKQVRVDASQVGSALHQLMQAIPLAYPVTAKTIAHALEQLELDQAVKAALDMVKVEQFFDKTVLGQQFQIYHRNLYR
EAPFAMLKTDPISQEDYVVRGIIDAFLLFEDHIELVDYKTDKYQNSLELKNRYQQQLTLYAEALTQTYGLPVTKKYLVLM
GDKKLEIVNI

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=54370 SCAZ3_RS08845 WP_003047936.1 1817963..1821595(+) (rexA) [Streptococcus canis FSL Z3-227]
GTGATAACATTTGAACCCTTTTTAAGCCCAGAAGCTATTGCTCAATTACAAGAAACAGAAAGCCGTAGTCAAGCAGCTCA
AAAAAGAACCCCCCAGCAGATTGAAGCCATATACAGTAGCGGTCAAAATATCCTTGTGTCAGCCTCTGCTGGGTCAGGAA
AAACCTTTGTGATGGTAGAACGCATTCTTGATAAAATCCTGAGAGGAGTTGCTATTGATCGGTTATTTATTTCCACCTTT
ACCGTTAAGGCAGCTACGGAATTGCGTGACCGTATTGAGAAAAAATTGTATGCTCAAATCGCTCAAACGACAGATTATCA
GCTAAAAGCCTACCTAACAGAGCAGCTGCAGACCCTGTCTCAGGCAGATATTGGCACCATGGATGCCTTTGCCCAAAAGT
TGGTCAATCACTATGGTTATAGCATTGGTTTGTCGCCTCGATTTCGTATTATGCAAGATAAGGCCGAGCAAGATGTTTTA
AAACAGGACGTTTTTAGCAAGCTATTTGAAACCTTTATGGCACAAAGTGATTCTTCTTTGTTCAAAGCACTGGTTAAAAA
TTTTTCTGGTAACCGAAAAGATGCATCCGCTTTTAGAGATCTGATTTATAGCTGTTATTCTTTTAGCCAGTCTACCGAAA
ACCCAAGAGAATGGTTGCAAGAAACGTTCTTAAAAGCAGCAAAAACCTATCAGCGCCTTGAAGATATACCTCTGCAAGAC
ATTGAATTATTGTTGGCAAGCATGCATGATACCGCAGATCAGTTAAGAGATTTGACTGACATGGAAGAATATGGTCAACT
GACCAAGGCTGGTAAACCAACGGTCAAATATATTAACCACCTAAAGGTTATTGAAAATCTTCATCATTGGGCGCGGGATT
TTGACCATCTCTATGGTAGGCAAGGAATTGGCCAATTGGCTAAAGACTTGACCACAATGCTCCCTTCTGGCAATGACGTG
ACTGTTGCTGGTACCAAGTATCCTATTTTTAAAGCCTTACACCAAAAATTAACACGCTTTAGACACTTAGAGACGATTTT
GGCATACCAAGGGGAAAGTCTTCCTTTGTTGGAAGTGTTGCAACGTTTTGTCGTAGCCTTTTCAGATGCCTATCTGGCCG
CTAAGATGCAAGAAGCAGCCTTTGAATTTACAGATATTGCCCATTTTGCCATTCAGATTTTAGAAGAAAACCCTGACATC
AGACAGGCCTACCAGCAGCAGTATCACGAAGTCATGGTTGATGAATACCAAGATAACAACCACATGCAGGAGCGCTTATT
AACTTTATTATCAAATGGTCATAATCGTTTTATGGTTGGTGATATGAAGCAATCCATTTACCGATTTCGACAAGCAGATC
CTCAAATTTTCAATCAGAAATTCAAAGACTATCAGGCTCATCCTGAGCAAGGGAAGCTTATTTTACTGAAAGAAAATTTC
CGAAGCCAATCAGAAGTTTTGGATGCCAGTAATGCTGTTTTTAGCCATTTGATGGATGAATCTCTGGGAGACATTTTATA
CGATGAGCAACATCAGTTGGTTGCTGGTAGCGATGCCCAAAAAGTGTCCTATCCTGAACATCGTGCTAAATTATTGCTTT
ATAACACTGACCGAAATGACGAAGTAGAAGAGGAAGATTCTGATGGCTTATCACCTAATGAGGTGAATATTGTTGCCAAA
GAAATCATCCGATTGCATAATGACCAAGGAGTACCTTTTGAAGACATCACCCTTCTTGTCTCAACAAGGACAAGAAATGA
TGCTATTTTTCATGCCTTTAATCAGTATGGTATCCCACTAGTAGCTGACGGTGGTCAGCAAAATTACCTCAAATCGGTTG
AAGTCATGGTCATGTTGGATACCTTGAGAACCATTAATAACCCAAGGAATGATTATGCCCTTGTTGCCCTGTTGCGCTCA
CCAATGTTTGCCTTTGATGAGGACGAATTAGCAAGGCTGGCGCTTCAAAAAGGCAGTGACCAAGATACTACTTGTCTTTA
TGACAAATTGGAAAAGGCCTTACTTGGAACGGGTGCTCACTCAGACTTAGTGCATGATGAGTTAATGGCAAAATTAAGTG
GTTTTATGGAAACCTTAAAGAATTGGCGTCGTTATGCTAAAATCAAATCTTTGCATGACCTCATTTGGAAAATTTTCAAT
GACCGATTTTACTTCGATCTGGTTGCTAGTCAAGCCAAGGCTGAGCAGGCCCAAGCCAATCTTTATGCGCTAGCCCTGCG
TGCCAATCAATTTGAGCAATCAGGATACAAAGGGTTATCTCGCTTTATTGGCATGATTGACAAGGTGTTAGAAACGAAAA
ATGATTTAGCAGACGTTGAAGTAACTAGTCCTAAGCAAGCGGTCAATCTCATGACGATTCACAAATCCAAGGGATTGGAA
TTCCAGTACGTGTTTATCCTTAACTGTGACAAACGCTTTGCCATGACAGATATTCATGCTCCGTTTATTTTAAATCGTCA
GCAGGGTATTGGAATCAAGTACTTGGCTGATGTTAAGGAGCTTTTGGGTGAAGAAACCTTAGCGTCAGTCAAAGTGAGTA
TGGAAACCTTGCCTTATCAGTTGAATCAGCAAGAGTTACGCTTGGCAACCTTATCTGAACAAATGCGGCTGTTGTACGTT
GCCATGACACGAGCTGAGAAACAACTTTTCCTTGTTGGAAAAGCCAGCAAGCAAAAAAGCCAAGAGTTGACAGATGGTAA
GTATACTGGTAAGTTGTTGCCTTTAGCGCTTCGAGAACAGTTGATGACTTTCCAAGACTGGCTCTTGGCTATCACAGATA
CCTTCACCACTGAAGACCTTTGTTTTGATGTGTGCTTTATTGAGGATAGCGACTTAAGTCCAGAGGTTATTGGTCAACTT
CAAAATCCACAAGTATTACATCCAGACAACCTCAAGGATAACCGTCAATCTGCGGACATTGTGCGTGCCTTAGATATGCT
AGACAAAGTGTCTCAATTAAATGCTGGCTATGAAGCCGCCATCAATCTCCCAACGGTTCGCACACCTAGCCAACTAAAGG
CTTCCTATGAGCCCTTGTTAGACTCAGAGGGGGTAGAGGTCATGGAAAAAACTTACCACACCTCTACAGCCTTTACTTTA
CCTGATTTTTCAAAACAGGTCAGAGTTGACGCTAGCCAAGTTGGGTCAGCCCTCCACCAATTGATGCAGGCTATTCCCTT
GGCTTATCCAGTAACAGCCAAAACAATCGCACATGCTCTAGAGCAACTAGAGTTGGACCAAGCGGTTAAGGCAGCTCTTG
ATATGGTGAAAGTTGAGCAATTCTTTGATAAGACAGTCTTGGGGCAGCAGTTTCAGATCTATCACAGGAATTTGTACAGA
GAAGCGCCTTTTGCCATGTTAAAAACAGATCCTATTAGTCAAGAAGACTATGTTGTTCGGGGAATCATTGATGCTTTTCT
CTTATTTGAGGATCATATTGAACTAGTGGATTATAAAACGGATAAATACCAAAATTCTTTGGAGTTAAAAAACCGTTACC
AACAACAGTTGACTTTATATGCAGAAGCCCTTACTCAGACCTATGGTCTTCCTGTAACCAAGAAATATTTGGTTCTAATG
GGAGACAAAAAATTGGAAATTGTCAATATCTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(30-465)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1189)

UvrD-like helicase C-terminal domain (UvrD_C)

(474-892)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.903

71.653

0.372

Multiple sequence alignment