Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LN352_RS07155 Genome accession   NZ_CP086622
Coordinates   1452553..1453290 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RIVM_C037884     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447553..1458290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN352_RS07130 (LN352_07130) - 1450015..1450155 (+) 141 WP_032140709.1 Hok/Gef family protein -
  LN352_RS07135 (LN352_07135) - 1450303..1450689 (-) 387 WP_192514684.1 hypothetical protein -
  LN352_RS07140 (LN352_07140) - 1450842..1451039 (+) 198 WP_077900366.1 Com family DNA-binding transcriptional regulator -
  LN352_RS07145 (LN352_07145) - 1450984..1451790 (+) 807 WP_186226695.1 DNA-methyltransferase -
  LN352_RS07150 (LN352_07150) raiA 1451941..1452282 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LN352_RS07155 (LN352_07155) comL 1452553..1453290 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LN352_RS07160 (LN352_07160) rluD 1453425..1454405 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LN352_RS07165 (LN352_07165) yfiH 1454402..1455133 (+) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  LN352_RS07170 (LN352_07170) clpC 1455263..1457836 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=543388 LN352_RS07155 WP_000197686.1 1452553..1453290(-) (comL) [Escherichia coli strain RIVM_C037884]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=543388 LN352_RS07155 WP_000197686.1 1452553..1453290(-) (comL) [Escherichia coli strain RIVM_C037884]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376