Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JZX97_RS06800 Genome accession   NZ_CP071155
Coordinates   1361944..1363191 (+) Length   415 a.a.
NCBI ID   WP_033533047.1    Uniprot ID   -
Organism   Listeria innocua strain LI42     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1356944..1368191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX97_RS06780 yfmH 1358108..1359394 (+) 1287 WP_194319840.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JZX97_RS06785 ymfI 1359494..1360225 (+) 732 WP_003771775.1 elongation factor P 5-aminopentanone reductase -
  JZX97_RS06790 - 1360274..1361209 (+) 936 WP_045553031.1 RodZ family helix-turn-helix domain-containing protein -
  JZX97_RS06795 pgsA 1361299..1361877 (+) 579 WP_003762173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JZX97_RS06800 cinA 1361944..1363191 (+) 1248 WP_033533047.1 competence/damage-inducible protein A Machinery gene
  JZX97_RS06805 recA 1363460..1364506 (+) 1047 WP_003766841.1 recombinase RecA Machinery gene
  JZX97_RS06810 rny 1364807..1366369 (+) 1563 WP_003721904.1 ribonuclease Y -
  JZX97_RS06815 - 1366485..1366982 (+) 498 WP_010991532.1 GNAT family N-acetyltransferase -
  JZX97_RS06820 - 1366987..1367790 (+) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  JZX97_RS06825 - 1367807..1368169 (+) 363 WP_003762190.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45569.74 Da        Isoelectric Point: 4.7994

>NTDB_id=543350 JZX97_RS06800 WP_033533047.1 1361944..1363191(+) (cinA) [Listeria innocua strain LI42]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKDVIDIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDAFHMNKITEYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSESAEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILHRDGTFLYGYGEVSLPELVTAMLLEKNITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QTIKENGVVSSECAKEMAKNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=543350 JZX97_RS06800 WP_033533047.1 1361944..1363191(+) (cinA) [Listeria innocua strain LI42]
ATGGCAAGCGCGGAAATTATCGCAGTTGGAACAGAACTATTACTAGGACAAATCGTGAACTCTAATGCTGCTTTTATTTC
AGAAGAATTAGCAGCTAACGGGATTTATGTCTACCATCACACTGTCGTTGGTGACAACCCTAAACGTTTAAAAGATGTGA
TAGACATTGCTGAAAAACGCAGTGATATTCTCATTTTCACGGGTGGATTAGGTCCTACAGAAGACGATATTACGAAACAA
ATTTTAGCAGAACATCTACAGAAAAACTTAGTAGAAGATGCGTTTCATATGAACAAAATCACGGAGTATTTTGCTTCAAG
AAATAGAACAATGACGGAAAATAACAAATTGCAAGCTGTAATTATTGAAGGATCTACTGTATTAAATAATGATTATGGCT
TTGCTGCAGGAATGTTCTTAAAAGAAAATAATCATACGTACATCTTACTTCCAGGCCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTCGTAAGTGAAAGTGCTGAGAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGTATTGGAGAATCGCAATTAGCAGCAGATTTAAATGATATGATTTTAGCGCAAGTAAATCCTACTATTGCTACATATG
CAGGTGATAATGAAGTAGTTGTGCGGATTACTGCTACTGCAAAGACTAAAGAGGAAGCAAGTGCCCTTGTGAACGAAACG
GAACAAGAAATTTTACACAGAGATGGAACTTTTTTATACGGTTACGGCGAAGTTTCTTTACCAGAATTAGTAACAGCCAT
GCTGCTTGAAAAAAATATCACTATTTCCGCTGCTGAAAGTTTTACCGCTGGATTATTCCAAGCAGAAATTGCCCGTTTTC
CTGGTATTTCTAAAATTTTTAAAGGTGGTATGGTCACATACAGCGAAGAGACAAAACAATCTATTCTTGAAGTCTCACCT
CAAACAATAAAAGAAAATGGAGTCGTAAGTTCAGAATGCGCGAAAGAAATGGCGAAGAATGTCAGCAGACTTTGTAACAC
TGATATAGGTATTAGTTTTACCGGCGTTGCAGGACCAGACAGTCTAGAAGGACATCCGGCAGGTACTATTTGGATAGGCT
TGCATGTAGCTGGTTTTGAAACAGAAGCTTATCAGTTCGTTTATGGTAGAGATCGAAATCACAATCGCCGTCGTGCTGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.554

0.506
  cinA Streptococcus mitis SK321

48.565

100

0.489
  cinA Streptococcus mutans UA159

48.558

100

0.487
  cinA Streptococcus pneumoniae TIGR4

48.095

100

0.487
  cinA Streptococcus pneumoniae Rx1

47.857

100

0.484
  cinA Streptococcus pneumoniae R6

47.857

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.971

100

0.484
  cinA Streptococcus pneumoniae D39

47.619

100

0.482
  cinA Streptococcus suis isolate S10

40.291

99.277

0.4