Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SCAZ3_RS04420 Genome accession   NZ_AIDX01000001
Coordinates   961846..962949 (-) Length   367 a.a.
NCBI ID   WP_003045859.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 956846..967949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS04405 (SCAZ3_11480) trpS 957829..958851 (+) 1023 WP_003045853.1 tryptophan--tRNA ligase -
  SCAZ3_RS04410 (SCAZ3_11485) guaB 959227..960708 (+) 1482 WP_003045855.1 IMP dehydrogenase -
  SCAZ3_RS04415 (SCAZ3_11490) - 960871..961734 (+) 864 WP_003045857.1 GRP family sugar transporter -
  SCAZ3_RS04420 (SCAZ3_11495) recF 961846..962949 (-) 1104 WP_003045859.1 DNA replication/repair protein RecF Machinery gene
  SCAZ3_RS04425 (SCAZ3_11500) yaaA 962951..963364 (-) 414 WP_003045861.1 S4 domain-containing protein YaaA -
  SCAZ3_RS04430 - 963444..964344 (-) 901 Protein_890 IS30 family transposase -
  SCAZ3_RS11595 - 964570..965394 (-) 825 Protein_891 DDE-type integrase/transposase/recombinase -
  SCAZ3_RS04445 (SCAZ3_11525) rlmH 965714..966193 (-) 480 WP_003045866.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SCAZ3_RS04450 (SCAZ3_11530) htrA 966406..967629 (+) 1224 WP_003045868.1 S1C family serine protease Regulator

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 41978.00 Da        Isoelectric Point: 9.4121

>NTDB_id=54327 SCAZ3_RS04420 WP_003045859.1 961846..962949(-) (recF) [Streptococcus canis FSL Z3-227]
MWIKELQLKHYRNYNQLSAEFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRIDKELIHFDQSSVSLSGKISRISGT
VDLEINLSDKGRVTKINSLKQAKLSDYIGIMMVVLFAPEDLQLVKGAPSLRRKFIDVDLGQIKPIYLSDLTHYNHVLKQR
NTYLKSAQHIDADFLAVLDEQLADYGSRVMEHRSDFINALEKEANRHHQAISNDLENLSLAYDSSVPFENKGEIYKQFLQ
LLKKNHQKDSFRKTTSVGPHRDDLAFYINDMNANFASQGQHRSLILSLKMAEVSLMKDLTGDNPILLLDDVMSELDNTRQ
TKLLKTVMKENVQTFITTTSLDHLSQLPKNIRIFQVTKGTIRVDSKM

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=54327 SCAZ3_RS04420 WP_003045859.1 961846..962949(-) (recF) [Streptococcus canis FSL Z3-227]
ATGTGGATCAAAGAATTACAACTAAAACATTATCGTAATTACAACCAGCTTTCTGCCGAATTTTCTTCTGGTTTAAATGT
CTTTATTGGTAATAATGCTCAAGGAAAAACCAATTTTCTGGAAGCCATCTATTTTTTATCGCTCACAAGAAGCCATCGAA
CGAGGATTGATAAAGAATTAATCCACTTTGACCAGTCAAGTGTCTCCCTTTCTGGTAAGATTAGCCGCATTAGTGGTACT
GTTGATTTGGAAATTAACCTTTCAGACAAAGGACGTGTGACAAAAATCAATTCCTTAAAGCAAGCGAAATTGTCTGACTA
CATTGGAATCATGATGGTTGTGCTCTTTGCACCAGAAGATTTACAACTGGTCAAAGGAGCTCCTAGTCTGCGCCGCAAAT
TCATTGACGTTGATTTGGGACAAATCAAGCCTATTTATTTATCAGATTTGACACATTACAATCATGTACTGAAGCAACGT
AACACTTATTTAAAGAGTGCCCAACATATTGACGCAGATTTTCTAGCTGTTTTAGATGAACAATTAGCTGATTATGGCAG
CCGAGTAATGGAACATCGCAGTGATTTTATCAATGCCCTAGAAAAAGAGGCTAATAGGCACCATCAAGCCATCTCAAATG
ATTTAGAAAACCTTTCACTTGCTTATGACTCCTCAGTTCCTTTTGAAAACAAAGGGGAAATTTACAAGCAATTCTTACAG
CTACTTAAAAAAAATCATCAGAAAGATTCCTTCCGTAAAACTACCAGTGTGGGCCCACATCGAGATGATCTGGCTTTTTA
CATTAATGATATGAATGCTAATTTTGCAAGCCAAGGACAACACCGTAGCCTTATACTCTCTTTAAAAATGGCTGAAGTCA
GTTTAATGAAAGACTTGACAGGAGATAATCCTATCCTTTTATTGGATGATGTCATGAGTGAGTTAGACAATACACGGCAA
ACAAAGCTACTTAAAACAGTGATGAAAGAAAATGTCCAAACTTTTATCACAACAACAAGCTTGGATCATCTATCACAATT
ACCAAAAAATATCCGTATTTTTCAGGTGACAAAAGGAACCATTCGAGTTGATTCCAAAATGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.466

99.455

0.621
  recF Bacillus subtilis subsp. subtilis str. 168

42.276

100

0.425

Multiple sequence alignment