Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   JZI44_RS11090 Genome accession   NZ_CP071148
Coordinates   1542723..1543121 (+) Length   132 a.a.
NCBI ID   WP_230197359.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain 470_001     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1540034..1544777 1542723..1543121 within 0


Gene organization within MGE regions


Location: 1540034..1544777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZI44_RS07390 (JZI44_07390) - 1540034..1541755 (+) 1722 WP_012679469.1 IS1634-like element ISSeq4 family transposase -
  JZI44_RS11085 - 1541778..1542440 (+) 663 WP_050316817.1 hypothetical protein -
  JZI44_RS11090 comB 1542723..1543121 (+) 399 WP_230197359.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  JZI44_RS07400 (JZI44_07400) - 1543215..1543370 (+) 156 WP_012515807.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  JZI44_RS07405 (JZI44_07405) tnpA 1543552..1543963 (-) 412 Protein_1447 IS200/IS605 family transposase -
  JZI44_RS07410 (JZI44_07410) tnpA 1544304..1544777 (-) 474 WP_012679713.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14922.25 Da        Isoelectric Point: 10.5175

>NTDB_id=543268 JZI44_RS11090 WP_230197359.1 1542723..1543121(+) (comB) [Streptococcus equi subsp. equi strain 470_001]
MHLNNEYEGKSLIPNGSDIAKIYPNITQTRKALITYFVTSDYVSLLKKGQTVRLNLQKVRKQSITVNGKISTIDKTATKT
EQGNLFKITTLAKLPSKDSYLIKYGAQGRVTSVIAKKSYFDFYKNKLLSNHD

Nucleotide


Download         Length: 399 bp        

>NTDB_id=543268 JZI44_RS11090 WP_230197359.1 1542723..1543121(+) (comB) [Streptococcus equi subsp. equi strain 470_001]
ATTCATCTAAATAATGAATACGAGGGGAAAAGTCTTATCCCAAATGGTAGTGATATTGCCAAAATCTATCCTAATATTAC
TCAAACTAGAAAAGCTCTGATTACATACTTTGTAACTTCTGATTATGTTTCTCTCCTTAAAAAAGGTCAAACTGTTCGTC
TAAATCTTCAAAAAGTGAGAAAACAGTCCATCACTGTTAATGGAAAAATTTCTACTATTGATAAAACAGCAACAAAAACA
GAACAAGGTAATCTTTTCAAGATTACAACTCTTGCCAAACTCCCTTCCAAGGATAGCTACTTGATAAAATATGGTGCACA
GGGTCGTGTTACAAGTGTTATCGCTAAAAAATCCTACTTCGACTTTTATAAGAATAAACTGTTGTCAAATCATGATTAA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

50.388

97.727

0.492
  comB/nlmE Streptococcus mutans UA159

48.485

100

0.485