Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   JZI48_RS11080 Genome accession   NZ_CP071145
Coordinates   1888876..1889277 (-) Length   133 a.a.
NCBI ID   WP_349627897.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain 470_007     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1887220..1891963 1888876..1889277 within 0


Gene organization within MGE regions


Location: 1887220..1891963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZI48_RS09145 (JZI48_09145) tnpA 1887220..1887693 (+) 474 WP_012679713.1 IS200/IS605 family transposase -
  JZI48_RS09150 (JZI48_09150) tnpA 1888034..1888445 (+) 412 Protein_1762 IS200/IS605 family transposase -
  JZI48_RS09155 (JZI48_09155) - 1888627..1888782 (-) 156 WP_012515807.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  JZI48_RS11080 comB 1888876..1889277 (-) 402 WP_349627897.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  JZI48_RS11085 - 1889557..1890219 (-) 663 WP_050316817.1 hypothetical protein -
  JZI48_RS09165 (JZI48_09165) - 1890242..1891963 (-) 1722 WP_012679469.1 IS1634-like element ISSeq4 family transposase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15035.41 Da        Isoelectric Point: 10.5175

>NTDB_id=543206 JZI48_RS11080 WP_349627897.1 1888876..1889277(-) (comB) [Streptococcus equi subsp. equi strain 470_007]
MIHLNNEYEGKSLIPNGSDIAKIYPNITQTRKALITYFVTSDYVSLLKKGQTVRLNLQKVRKQSITVNGKISTIDKTATK
TEQGNLFKITTLAKLPSKDSYLIKYGAQGRVTSVIAKKSYFDFYKNKLLSNHD

Nucleotide


Download         Length: 402 bp        

>NTDB_id=543206 JZI48_RS11080 WP_349627897.1 1888876..1889277(-) (comB) [Streptococcus equi subsp. equi strain 470_007]
ATTATTCATCTAAATAATGAATACGAGGGGAAAAGTCTTATCCCAAATGGTAGTGATATTGCCAAAATCTATCCTAATAT
TACTCAAACTAGAAAAGCTCTGATTACATACTTTGTAACTTCTGATTATGTTTCTCTCCTTAAAAAAGGTCAAACTGTTC
GTCTAAATCTTCAAAAAGTGAGAAAACAGTCCATCACTGTTAATGGAAAAATTTCTACTATTGATAAAACAGCAACAAAA
ACAGAACAAGGTAATCTTTTCAAGATTACAACTCTTGCCAAACTCCCTTCCAAGGATAGCTACTTGATAAAATATGGTGC
ACAGGGTCGTGTTACAAGTGTTATCGCTAAAAAATCCTACTTCGACTTTTATAAGAATAAACTGTTGTCAAATCATGATT
AA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

50.769

97.744

0.496
  comB/nlmE Streptococcus mutans UA159

48.872

100

0.489