Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   JZI57_RS11065 Genome accession   NZ_CP071142
Coordinates   1535648..1536049 (-) Length   133 a.a.
NCBI ID   WP_349627897.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain 489_004     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1533992..1538735 1535648..1536049 within 0


Gene organization within MGE regions


Location: 1533992..1538735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZI57_RS07520 (JZI57_07520) tnpA 1533992..1534465 (+) 474 WP_012679713.1 IS200/IS605 family transposase -
  JZI57_RS07525 (JZI57_07525) tnpA 1534806..1535217 (+) 412 Protein_1438 IS200/IS605 family transposase -
  JZI57_RS07530 (JZI57_07530) - 1535399..1535554 (-) 156 WP_012515807.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  JZI57_RS11065 comB 1535648..1536049 (-) 402 WP_349627897.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  JZI57_RS11070 - 1536329..1536847 (-) 519 WP_231198144.1 hypothetical protein -
  JZI57_RS07540 (JZI57_07540) - 1537014..1538735 (-) 1722 WP_012679469.1 IS1634-like element ISSeq4 family transposase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15035.41 Da        Isoelectric Point: 10.5175

>NTDB_id=543082 JZI57_RS11065 WP_349627897.1 1535648..1536049(-) (comB) [Streptococcus equi subsp. equi strain 489_004]
MIHLNNEYEGKSLIPNGSDIAKIYPNITQTRKALITYFVTSDYVSLLKKGQTVRLNLQKVRKQSITVNGKISTIDKTATK
TEQGNLFKITTLAKLPSKDSYLIKYGAQGRVTSVIAKKSYFDFYKNKLLSNHD

Nucleotide


Download         Length: 402 bp        

>NTDB_id=543082 JZI57_RS11065 WP_349627897.1 1535648..1536049(-) (comB) [Streptococcus equi subsp. equi strain 489_004]
ATTATTCATCTAAATAATGAATACGAGGGGAAAAGTCTTATCCCAAATGGTAGTGATATTGCCAAAATCTATCCTAATAT
TACTCAAACTAGAAAAGCTCTGATTACATACTTTGTAACTTCTGATTATGTTTCTCTCCTTAAAAAAGGTCAAACTGTTC
GTCTAAATCTTCAAAAAGTGAGAAAACAGTCCATCACTGTTAATGGAAAAATTTCTACTATTGATAAAACAGCAACAAAA
ACAGAACAAGGTAATCTTTTCAAGATTACAACTCTTGCCAAACTCCCTTCCAAGGATAGCTACTTGATAAAATATGGTGC
ACAGGGTCGTGTTACAAGTGTTATCGCTAAAAAATCCTACTTCGACTTTTATAAGAATAAACTGTTGTCAAATCATGATT
AA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

50.769

97.744

0.496
  comB/nlmE Streptococcus mutans UA159

48.872

100

0.489