Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JTZ62_RS14860 Genome accession   NZ_CP071138
Coordinates   2912620..2913147 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain SSC-7107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2907620..2918147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTZ62_RS14830 (JTZ62_14830) coaA 2908124..2909026 (+) 903 WP_058611244.1 type I pantothenate kinase -
  JTZ62_RS14835 (JTZ62_14835) - 2909050..2909853 (+) 804 WP_058611245.1 hypothetical protein -
  JTZ62_RS14840 (JTZ62_14840) - 2909898..2910788 (-) 891 WP_070373458.1 PhzF family phenazine biosynthesis protein -
  JTZ62_RS14845 (JTZ62_14845) - 2910828..2911232 (-) 405 WP_058611022.1 nucleoside 2-deoxyribosyltransferase -
  JTZ62_RS14850 (JTZ62_14850) - 2911258..2911806 (-) 549 WP_058611023.1 nucleotidyltransferase family protein -
  JTZ62_RS14855 (JTZ62_14855) rpsR 2912318..2912560 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  JTZ62_RS14860 (JTZ62_14860) ssbA 2912620..2913147 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  JTZ62_RS14865 (JTZ62_14865) rpsF 2913175..2913468 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  JTZ62_RS14870 (JTZ62_14870) ychF 2913640..2914740 (-) 1101 WP_048542912.1 redox-regulated ATPase YchF -
  JTZ62_RS14875 (JTZ62_14875) - 2914744..2914941 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  JTZ62_RS14880 (JTZ62_14880) - 2914965..2915849 (-) 885 WP_049320694.1 mechanosensitive ion channel family protein -
  JTZ62_RS14885 (JTZ62_14885) - 2915861..2916697 (-) 837 WP_058611024.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=543013 JTZ62_RS14860 WP_025906200.1 2912620..2913147(-) (ssbA) [Mammaliicoccus sciuri strain SSC-7107]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=543013 JTZ62_RS14860 WP_025906200.1 2912620..2913147(-) (ssbA) [Mammaliicoccus sciuri strain SSC-7107]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537