Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYU32_RS00040 Genome accession   NZ_CP071125
Coordinates   10195..10797 (+) Length   200 a.a.
NCBI ID   WP_012778278.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain KF511     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5195..15797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYU32_RS00030 (JYU32_00030) gyrA 6676..9237 (+) 2562 WP_012778277.1 DNA gyrase subunit A -
  JYU32_RS00035 (JYU32_00035) rpsF 9859..10158 (+) 300 WP_003637271.1 30S ribosomal protein S6 -
  JYU32_RS00040 (JYU32_00040) ssb 10195..10797 (+) 603 WP_012778278.1 single-stranded DNA-binding protein Machinery gene
  JYU32_RS00045 (JYU32_00045) rpsR 10836..11072 (+) 237 WP_003641635.1 30S ribosomal protein S18 -
  JYU32_RS00050 (JYU32_00050) - 11253..13265 (+) 2013 WP_003643610.1 DHH family phosphoesterase -
  JYU32_RS00055 (JYU32_00055) rplI 13278..13730 (+) 453 WP_003641637.1 50S ribosomal protein L9 -
  JYU32_RS00060 (JYU32_00060) dnaB 13746..15170 (+) 1425 WP_003641638.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21758.11 Da        Isoelectric Point: 4.6173

>NTDB_id=542917 JYU32_RS00040 WP_012778278.1 10195..10797(+) (ssb) [Lactiplantibacillus plantarum strain KF511]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQSANGGSGNNNYNNDNSNYNNNNNGYSNQGQNAAPQQSSANNNNPFGN
GNTGNASSAAPSSSANNNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=542917 JYU32_RS00040 WP_012778278.1 10195..10797(+) (ssb) [Lactiplantibacillus plantarum strain KF511]
ATGATTAACCGTACAATTCTTGTTGGCCGACTGACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACGTTCACTATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTCATTAGTTGCGTCATTT
GGCGTAAAGCTGCTGAAAATTTTGCGAACTTTACTCATAAAGGTTCACTTGTTGGTATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGTGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCATTATTAGAATCACGGGC
AGAGTCTGAACGTCATCAGTCTGCCAATGGTGGTAGTGGTAATAACAATTACAACAATGATAATTCGAATTACAACAACA
ATAATAATGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAATAACCCATTTGGTAAT
GGTAATACTGGTAATGCTAGCAGTGCGGCACCATCAAGCAGTGCTAACAACAATAATCAGGCTGACCCATTCGCTAATAA
TGGCGATCAAATTGATATCTCGGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.5

100

0.535